BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68350.1
Length=776
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475954 jgi|Araly1|475954|fgenesh2_kg.2__1084__AT1G68350.1 854 0.0
> Ahg475954 jgi|Araly1|475954|fgenesh2_kg.2__1084__AT1G68350.1
Length=658
Score = 854 bits (462), Expect = 0.0
Identities = 607/674 (90%), Gaps = 21/674 (3%)
Strand=Plus/Plus
Query 16 TTTAAATCAAAATGTCCCAAAGAAGAAGACCAATTTTCCAAAGAGTTTCGAAACTACTAA 75
||||||| |||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 1 TTTAAATTAAAATGTCCCAAAGAAGAAGACCAATTTTCCAGAGGGTCTCGAAACTACTAA 60
Query 76 AAATCTCGATCTTGAGAAGACCCATCATCCCAAGACTCAAGCTAATTCCCATAAAACAAA 135
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 61 AAGTCTCGATCTTGAGAAGACCCATCATCCCAAGACTCAAGCTTATTCCCATAAAACGAA 120
Query 136 GAAG---ATCCAAAAGGGTCAAACTCCTTCAGCAACACAACTATAAATTTCTCCAAGAGT 192
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 GAAGATCATCCAAAAGGGTCAAACTCCTTCAGCAATACAACTATAAATTTCTCCAAGAGT 180
Query 193 ATCAATTCTCTCCTTCAAGTACATC-CTTTATCAAATGCTATGGGAAGAGCATTCAGATA 251
||||||||||||||||||||||||| | ||||| ||||| |||||| |||| | ||
Sbjct 181 ATCAATTCTCTCCTTCAAGTACATCGC-TTATCCGATGCTGCCCGAAGAGAATTCGGTTA 239
Query 252 TCTAGATCGGGTCTTAAACGCATTTACGGGTTATTGTTTCTTTCTCAGTGTATCGGCCGG 311
||||| ||| |||||||||||||||||||||||||||||||||||| |||||| || |
Sbjct 240 TCTAGTTCGAGTCTTAAACGCATTTACGGGTTATTGTTTCTTTCTCGGTGTATTGG-C-- 296
Query 312 TATAATGAAAATGATGACACAATAACGCAAAGTTGGATGGAGATGGAGCCTTTTCATTAT 371
|| | || || ||||||||||| |||||||||||||||||||||||| |||| |
Sbjct 297 ---AA-G--GAT--TG-CACAATAACGCGAAGTTGGATGGAGATGGAGCCTTTGCATTGT 347
Query 372 GCCCTCGGAGTTGCTTCTCCTGCAAGGGAGCATCTGCAGCCGTTCGATTACTTCAGCGAA 431
||||| ||||||||||||| ||||||||| |||||| |||||||||||||||||||||
Sbjct 348 GCCCTTAAAGTTGCTTCTCCTACAAGGGAGCTTCTGCATCCGTTCGATTACTTCAGCGAA 407
Query 432 GATGATTCGATTGACTTGAAGGCTGAGAGATTCATCGAAAAGTTCTATGATGAGATGAGA 491
|||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 408 GATGATTCAATTGACGTGAAGGCTGAGAGATTCATCGAAAAGTTCTACGATGAGATGAGG 467
Query 492 ATGCAGGCGCGAGAATTTGCTTGATTGACCAAATGTCAAGTGTTATTAATTACTTTTTGA 551
||||||||||| |||||||||||||||| |||| |||||||| |||||||||||||||
Sbjct 468 ATGCAGGCGCGGGAATTTGCTTGATTGATCAAACGTCAAGTG---TTAATTACTTTTTGA 524
Query 552 ATTTGGGATTCTTTTCTACTTGTGTTAGTTTTC-TTTTACACGTGATTGGTATTGTTAAT 610
|||| ||| |||||| | ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 525 ATTTTGGAATCTTTTTTTCTTGTGTTAGTTTTCTTTTTACACGTGATTGGTATTGTTAAT 584
Query 611 TGTCTCCACATCATATTTAAGATCTTGGAGACTCAGTTATTTCGCTCTATTTGAGTATTT 670
||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 585 TGTCTCCGCATCATATTTAAGATCTTGGAGACTCAGTTATTTCGCTTTATATGAGTATTT 644
Query 671 GATTCTATCCATTT 684
||||||||| ||||
Sbjct 645 GATTCTATCAATTT 658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28630310667
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5