BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68360.1
Length=735
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926113 jgi|Araly1|926113|scaffold_201674.1 1197 0.0
Ahg475797 jgi|Araly1|475797|fgenesh2_kg.2__927__AT1G67030.1 141 7e-33
> Ahg926113 jgi|Araly1|926113|scaffold_201674.1
Length=776
Score = 1197 bits (648), Expect = 0.0
Identities = 706/735 (96%), Gaps = 0/735 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGAGCTGGATTTTAGTTCAAAAACAACAACTTCTCGTCTAAAGCTATTTGGATTT 60
|||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||
Sbjct 21 ATGGAGGAGCTGGATTTTGGTTCAAAAACAACTACTTCTCGTCTAAAGTTATTTGGATTT 80
Query 61 AGTGTTGATGGAGAAGAAGATTTCTCCGATCAATCAGTCAAAACTAACCTATCTTCTGTA 120
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 81 AGTGTTGATGGAGAAGAAGATTTCTCCGATCAATCAGTCAAAACTAGCCAATCTTCTGTA 140
Query 121 TCACCGGAACGTGGCGAGTTTCCGGCAGGATCTTCCGGAAGAAGTGGCGGTGGTGTACGA 180
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 141 TCACCTGAACGTGGCGAGTTTCCGGCGGGATCTTCCGGAAGAAGTGGCGGTGGTGTACGA 200
Query 181 AGCCGAGGCggaggaggaggaggaggagAACGTAAGTATGAGTGTCAGTATTGTTGTAGA 240
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 201 AGCCGAGGCGGAGGAGGAGGAGGAGGAGAACGTAAGTACGAGTGTCAGTACTGTTGTAGA 260
Query 241 GAGTTTGGTAACTCACAAGCCTTAGGTGGTCACCAAAACGCTCACAAGAAAGAGCGTCAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 GAGTTTGGTAACTCACAAGCCTTAGGTGGTCACCAAAACGCTCACAAGAAAGAGCGTCAA 320
Query 301 CAGCTTAAACGTGCTCAGCTTCAAGCTACACGAAACGCAGCCGCAAATTTCTCAAACGCT 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 321 CAGCTTAAACGTGCTCAGCTTCAAGCTACACGAAACGCAGCCGCGAATTTCTCAAACGCT 380
Query 361 GGATCAGCGTCTCAGTTTTTAAGGAATCCTATAGTCTCTGCTTTTGCTCCTCCGCCTCAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 GGATCAGCGTCTCAGTTTTTAAGGAATCCTATAGTCTCTGCTTTTGCTCCTCCGCCTCAT 440
Query 421 CTTTTATCATCATCCGCCGTGCCTCAGCCTATGGGAGGTCCTTGGATGTATCTTCCACGT 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 441 CTTTTATCATCATCCGCCGTGTCTCAGCCTATGGGAGGTCCTTGGATGTATCTTCCACGT 500
Query 481 GTTTCTCCATCTCAACTTCACGTGTCTCATGGCTGCGTCATCCAAGATGGTTCGGGTGGT 540
|| ||||| ||||| || |||||||| ||||| ||||| || || |||||||||||||||
Sbjct 501 GTCTCTCCCTCTCAGCTGCACGTGTCGCATGGTTGCGTGATTCAGGATGGTTCGGGTGGT 560
Query 541 GCGGGTGCTGGTGGGTTCTCGTACGAGTATGGGGCTCGTGATTCAGGGTTTGGAGTAGTT 600
||| || | || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 GCGAGTACGGGCGGGTTCTCGTACGAGTATGGGGCTCGTGATTCAGGGTTTGGAGTAGTT 620
Query 601 GGGGCTCAGATGAGACATGTTCAGGCCCATGGGCCGAGACCATCGGTTAATGGGTTTTCA 660
||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 621 GGGCCTCAGATGAGACATGTTCAGGCCCATGGGCCGAGACCATCGGGTAATGGGTTTTCC 680
Query 661 AGAGAAGTAGGAACTACTTTTGATGATGGTTTAGGGTTGGATTTGCATCTCAGTCTTGCA 720
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 ACAGAAGTAGGAACTACTTTTGATGATGGTTTAGGGTTGGATTTGCATCTCAGTCTTGCA 740
Query 721 CCTGCTGGTCATTGA 735
|| ||||||||||||
Sbjct 741 CCAGCTGGTCATTGA 755
> Ahg475797 jgi|Araly1|475797|fgenesh2_kg.2__927__AT1G67030.1
Length=929
Score = 141 bits (76), Expect = 7e-33
Identities = 100/111 (90%), Gaps = 4/111 (4%)
Strand=Plus/Plus
Query 210 ACGTAAGTATGAGTGTCAGTATTGTTGTAGAGAGTTTG-GTAACTCACAAGC-CTTAGGT 267
||||||||| |||||||| ||||||||||||||||||| | ||||| ||||| ||| |||
Sbjct 195 ACGTAAGTACGAGTGTCAATATTGTTGTAGAGAGTTTGCG-AACTCTCAAGCTCTT-GGT 252
Query 268 GGTCACCAAAACGCTCACAAGAAAGAGCGTCAACAGCTTAAACGTGCTCAG 318
|||||||||||||||||||||||||||||||| | ||||||||||| |||
Sbjct 253 GGTCACCAAAACGCTCACAAGAAAGAGCGTCAGCTTCTTAAACGTGCACAG 303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27067271070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5