BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68370.1
Length=1745
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926115 jgi|Araly1|926115|scaffold_201676.1 2102 0.0
Ahg926114 jgi|Araly1|926114|scaffold_201675.1 331 9e-90
> Ahg926115 jgi|Araly1|926115|scaffold_201676.1
Length=1292
Score = 2102 bits (1138), Expect = 0.0
Identities = 1230/1276 (96%), Gaps = 0/1276 (0%)
Strand=Plus/Plus
Query 208 GAAGATGAGCGCGAAAAAGCTTGAAGGTTCGTCGGCTCCGGCGAATCGACGGGATCCGTA 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 17 GAAGATGAGCGCGAAAAAGCTTGAAGGTTCGTCGGCTCCGGCGAATCGACGGGATCCGTA 76
Query 268 CGAGGTCCTTTGTGTATCAAAGGACGCTAATGATCAAGAAATCAAATCCGCTTACAGAAA 327
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 CGAGGTTCTTTGTGTATCAAAGGACGCTAATGATCAAGAAATCAAATCCGCTTACAGAAA 136
Query 328 ATTAGCTCTCAAGTATCATCCGGATAAGAATGCGAACAATCCTGATGCTTCTGAGCTTTT 387
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 137 ATTAGCTCTCAAGTATCATCCGGATAAGAATGCCAACAATCCTGATGCTTCTGAGCTTTT 196
Query 388 CAAGGAAGTTGCATTTTCGTATAGCATTTTGTCTGATCCTGAAAAGAGAAGGCACTATGA 447
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 197 CAAGGAAGTTGCATTTTCTTATAGCATTTTGTCTGACCCTGAAAAGAGAAGGCACTATGA 256
Query 448 CAATGCAGGATTTGAGGCACTCGATGCTGATGGAATGGATATGGAAATTGACTTGTCAAA 507
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 257 CAATGCAGGATTTGAGGCACTCGATGCTGATGGAATGGACATGGAAATTGACTTGTCAAA 316
Query 508 CCTCGGGACCGTAAATACCATGTTTGCAGCATTGTTCAGCAAACTAGGTGTGCCTATCAA 567
|||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 317 CCTCGGAACTGTAAATACCATGTTTGCAGCATTATTCAGCAAACTAGGTGTTCCTATCAA 376
Query 568 GACTACTGTATCTGCTAATGTTCTTGAAGAGGCTATGAATGGAACTGTTACAGTTAGGCC 627
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 377 GACTACTGTGTCTGCCAATGTTCTTGAAGAGGCTATGAATGGAACTGTTACAGTTAGACC 436
Query 628 TCTTCCTATTGGAACATCAGTTAGTGGGAAGGTTGAGAAGCAATGCGCTCAtttttttGG 687
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 437 CCTTCCTATTGGAACATCAGTTAGTGGGAAGGTTGAAAAGCAATGCGCCCATTTTTTTGG 496
Query 688 AGTTACGATAAGTGAACAACAAGCTGAATCAGGGGTTGTTGTTAGAGTAACTTCAACAGC 747
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 497 AGTTACTATAAGTGAACAACAAGCTGAATCAGGGGTTGTTGTTAGAGTTACTTCAACAGC 556
Query 748 ACAAAGTAAATTTAAGTTACTTTATTTTGAGCAAGATTCAAGTGGTGGCTATGGATTGGC 807
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 557 ACAAAGTAAATTTAAGTTACTTTATTTTGAGCAAGATTCAAGTGGCGGCTATGGATTGGC 616
Query 808 CTTACAGGAAGAGCGTGAGAAAACAGGGAAGGTGACATCAGCTGGCATGTATTTCTTACA 867
||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 617 CTTACAGGAAGAGAGCGAGAAAACAGGCAAGGTGACATCAGCTGGCATGTATTTCTTACA 676
Query 868 TTTTCAAGTGTATAGAATGGATACAACTGTCAATGCGTTGGCTGCAGCCAAGGACCCTGA 927
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 677 TTTTCAAGTGTATAGAATGGATTCAACTGTCAATGCGTTGGCTGCAGCCAAGGACCCTGA 736
Query 928 ATCTGCTTTCTTCAAGCGATTGGAAGGTCTTCAACCTTGTGAGGTTTCGGAACTGAAAGC 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 ATCTGCTTTCTTCAAGCGATTGGAAGGTCTTCAACCTTGTGAGGTTTCGGAACTGAAAGC 796
Query 988 TGGCACGCATATATTTGCAGTTTATGGTGATAATTTCTTTAAGACTGCATCTTACACGAT 1047
|||||| ||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 797 TGGCACACATATATTTGCCGTTTACGGTGATAACTTCTTTAAGACTGCATCCTACACGAT 856
Query 1048 TGAAGCACTCTGTGCCAAGACCTATGAGGATACAACAGAGAAGTTAAAGGAGATTGAAGC 1107
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 857 TGAGGCACTCTGTGCCAAGACCTATGAGGATACAACAGAGAAGTTGAAGGAGATTGAAGC 916
Query 1108 TCAAATCTTAAGAAAGAGAAACGAACTGCGGCAGTTTGAAACAGAGTACCGAAAAGCTTT 1167
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 917 TCAAATCTTAAGAAAGAGAAACGAGTTGCGGCAGTTTGAAACAGAGTACCGAAAAGCTTT 976
Query 1168 GGCGCGGTTTCAAGAAGTTACCAACAGATATACACAGGAGAAACAAACTGTGGATGAACT 1227
|||||||||||||||||| ||||||||||| || |||||||| |||||||||||||||||
Sbjct 977 GGCGCGGTTTCAAGAAGTCACCAACAGATACACGCAGGAGAAGCAAACTGTGGATGAACT 1036
Query 1228 GCTAAAGCAACGGGATACAATCCATTCGACCTTCTCTGTTGTGAAGACACCAAGCGGCAA 1287
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1037 GCTAAAACAACGGGATACAATCCATTCGACCTTCTCTGTCGTGAAGACACCAAGCAGCAA 1096
Query 1288 CAACTTGAGCAATGGAAGTAGCAGCAAAGCTCAGGGAGATGAATCAAAAGGTGATGGGGA 1347
||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 1097 CAACTTGAGCAATGGAAGTAGCAGCAAAGCTCAGGGAGAGGAATCAAAAGGGGAAGGGGA 1156
Query 1348 TAGTGCGGGAGAAGAAGGCGGAACAGAGAATAGAGACAAATCCAAGAGGAAATGGTTCAA 1407
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1157 TAGTGCAGGAGAAGAAGGCGGAACAGAGAGTAGAGACAAATCCAAGAGGAAATGGTTCAA 1216
Query 1408 CTTGAACCTAAAAGGATCTGATAAGAAGCTTGGTTGATCAGAACACGGATTTGTTGCGGG 1467
||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||
Sbjct 1217 CTTGAACCTAAAAGGATCTGATAAGAAGCTTGGTTAACCAGAACGCGGATTTGTTGCGGG 1276
Query 1468 TCATTGGTATTTTGTT 1483
||||||||||||||||
Sbjct 1277 TCATTGGTATTTTGTT 1292
> Ahg926114 jgi|Araly1|926114|scaffold_201675.1
Length=875
Score = 331 bits (179), Expect = 9e-90
Identities = 364/448 (81%), Gaps = 33/448 (7%)
Strand=Plus/Plus
Query 1026 TTA-AGACTGCATCTTACACGATTGAAGCACTCTGTGCCAAGACCTATGAGGATACAACA 1084
||| ||| | |||| ||||| ||||| ||||| ||||||||||| ||||||||||||| |
Sbjct 412 TTACAGAGTACATCCTACACAATTGAGGCACTATGTGCCAAGACTTATGAGGATACAATA 471
Query 1085 GAGAAGTT-AAAGGAGATTGAAGCTCAAATCTTAAGAAAGAGA----A----ACG-AA-C 1133
|||||||| ||| |||||||||||||| | |||| ||||||| | || ||
Sbjct 472 GAGAAGTTGAAA-GAGATTGAAGCTCAGGTTTTAACAAAGAGATTTGATTTGCCGCAATT 530
Query 1134 T--G-C---G-----GCAGTTTGAAACAGAGTACCGA-AAAGCTTTGGCGCGGTTTCAAG 1181
| | | | |||||| || | |||||| | | |||||||||||||| ||| ||
Sbjct 531 TGAGACAGAGTACCAGCAGTTGGAGATAGAGTATC-ACAAAGCTTTGGCGCGTTTTGAAA 589
Query 1182 AAGTTACCAACAGATATACACAGGAGAAACAA-ACTGTGGATGAACTGCTAAAGCAACGG 1240
||| ||||| |||||| | ||||||| ||| | |||||||||||||||||||||||||
Sbjct 590 AAGGGACCAAAAGATATTCGCAGGAGATGCAATA-TGTGGATGAACTGCTAAAGCAACGG 648
Query 1241 GATACAATCCATTCGACCTTCTCTGTTGTGAAGACACCAAGCGGCAACAACTTGAGCAAT 1300
||| |||||| |||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 GATTCAATCCGTTCGTCTTTCTCTGTTGTGAAGACACCAAGCGGCAACAACTTGAGCAAT 708
Query 1301 GGAAGTAGCAGCAAAGCTCAGGGAGATGAATCAAAAGGTGATGGGGATAGTGCGGGAGAA 1360
||||||||||||||||||||||| || |||||||||||||| |||||||||| || ||||
Sbjct 709 GGAAGTAGCAGCAAAGCTCAGGGTGAGGAATCAAAAGGTGAGGGGGATAGTGTGGTAGAA 768
Query 1361 GAAGGCGGAAC-AGAGAATAGAGACAAATCCAAGAGGAAATGGTTCAACTTGAACCTAAA 1419
||||| | ||| ||||| || | ||| |||||| | |||||||||||||| ||||| |
Sbjct 769 GAAGGAG-AACCAGAGAGTAAAAACAGATCCAAAAACAAATGGTTCAACTTCAACCTCGA 827
Query 1420 AGGATCTGA---TAAGAAGCTTGGTTGA 1444
|||| ||| ||||||||||| ||||
Sbjct 828 TGGATATGAAAATAAGAAGCTTGATTGA 855
Score = 326 bits (176), Expect = 4e-88
Identities = 240/272 (88%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 543 TCAGCAAACTAGGTGTGCCTATCAAGACTACTGTATCTGCTAATGTTCTTGAAGAGGCTA 602
||| ||| |||||||| || || || |||| |||| ||| |||||||||||||| ||||
Sbjct 146 TCAACAACCTAGGTGTTCCCATTAAAACTAGTGTAAATGCCAATGTTCTTGAAGAAGCTA 205
Query 603 TGAATGGAACTGTTACAGTTAGGCCTCTTCCTATTGGAACATCAGTTAGTGGGAAGGTTG 662
|||||||| | ||||| ||| ||||||||| ||||| |||||||||||||||||||| |
Sbjct 206 GGAATGGAAATTTTACACTTAAGCCTCTTCCGATTGGTACATCAGTTAGTGGGAAGGTAG 265
Query 663 AGAAGCAATGCGCTCAtttttttGGAGTTACGATAAGTGAACAACAAGCTGAATCAGGGG 722
| |||||| |||| |||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 266 ACAAGCAACACGCTGATTTTTTTCGAGTTACGATAAGTGAAGAACAAGCTAAATCAGGGG 325
Query 723 TTGTTGTTAGAGTAACTTCAACAGCACAAAGTAAATTTAAGTTACTTTATTTTGAGCAAG 782
||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 326 TTGTTGTAAGAGTAACATCAACAGAACAAAGTAAATTTAAGTTACTTTATTTTGAGCAAG 385
Query 783 ATTCAAGTGGTGGCTATGGATTGGCCTTACAG 814
|||||| ||| ||||||||||| |||||||||
Sbjct 386 ATTCAAATGGCGGCTATGGATTAGCCTTACAG 417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65477131155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5