BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68380.1
Length=1343
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475957 jgi|Araly1|475957|fgenesh2_kg.2__1087__AT1G68380.1 1810 0.0
> Ahg475957 jgi|Araly1|475957|fgenesh2_kg.2__1087__AT1G68380.1
Length=1249
Score = 1810 bits (980), Expect = 0.0
Identities = 1166/1255 (93%), Gaps = 16/1255 (1%)
Strand=Plus/Plus
Query 11 TTTTAACCCTTAAAACATTGGAAACAAGAATTCTCTTACACATGTATCGGTAGTTGGAAA 70
|||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||
Sbjct 1 TTTTAACCCTTAAAACATTGAAAACAAGAATTCTCCTACACATGTACCGGTAGTTGGAAA 60
Query 71 TGCCGACCCAAAAGGACCAAAACTCACCATTATCTCAAGTGATAGAGCTTCTCAAGAAAC 130
||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||
Sbjct 61 TGCCGACCCAAAAGGACCAAAACTCACAATTATCTCTACTGATAGAGCTTCTCAAGAAAC 120
Query 131 TACTCCACCATTTCCACAATCTCCTTTTGTATTTCTTCATCCTCTGGATCGGCGTGATAG 190
||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 121 TACTCAACCATTTCCACAATCTCCTTTTGTATTTCCCCATCCTCTGGATCACCGTGATAG 180
Query 191 TTGGAATCATTGTTTATCCCTCTCTACAAGGATTATCTTCGCCTTCTTCGTTAACCATCC 250
| ||||||||||||||| |||||||||||| | ||||||||||||||||| ||||| |||
Sbjct 181 TCGGAATCATTGTTTATTCCTCTCTACAAGCAATATCTTCGCCTTCTTCGCTAACCGTCC 240
Query 251 AAAGTGTCTCCCAACTCTTCTTTGTAACCCCTCCTCCTCCTATTCTTTCTCCTTCATTTC 310
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 241 AAAGTGTCTCCCAACTCTTCTTTGTAACCTCTCCTCCTCCTATTCCTTCTCCTTCATTTC 300
Query 311 AGGACAATGGGCTTGACATGTTTCTGATA-CC-ACTGAAGAACATCATGCAC-GATATGG 367
|||| |||||||| || | |||||||| | || || |||||||||||||||| || ||||
Sbjct 301 AGGAAAATGGGCTCGAAAAGTTTCTGA-AGCCAAC-GAAGAACATCATGCACGGA-ATGG 357
Query 368 AAGATAATGAACTTCTGTGGAGAGCTTCAATGGATCCTAAGATCAG-GGATTACCCTTAT 426
|||| ||||| |||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 358 AAGACAATGAGCTTCTGTGGAGAGCTTCAATGGATCCCAAGATCAGAGG-TTACCCTTAT 416
Query 427 CCTAGAATCCCGAAGGTTGCTTTCATGTTCTTGACTTGGGGACCTTTACCTTTGGCTCCT 486
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CCTAGAATCCCAAAGGTTGCTTTCATGTTCTTGACTTGGGGACCTTTACCTTTGGCTCCT 476
Query 487 CTATGGGAAAGGTTCTTTCGAGGTCATGAAGGTCTTTTCACTATCTACGTTCACACCAAT 546
|| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 477 CTTTGGGAAAGGTTCTTTCGTGGGCATGAAGGTCTTTTCACTATCTACGTTCACACCAAT 536
Query 547 TCGTCTTACGACGAGTTCATGC-CGCAAGACTCTGTGTTTTATGGCCGCCGTATTCCAAG 605
|||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||
Sbjct 537 TCGTCTTACGACGAGTTCATGCTC-CAAGGCTCTGTGTTTTATGGCCGCCGTATTCCAAG 595
Query 606 CAAGAGAGTGGATTGGGGAAACGCAAACATGGTAGAAGCAGAACGAAGGTTATTAGCAAA 665
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 596 CAAGAGAGTGGATTGGGGAAACGCAAACATGGTAGAAGCAGAACGAAGGTTACTAGCAAA 655
Query 666 CGCTTTATTAGACATCAACAACGAACGTTTCATTCTTCTCTCCGAATCATGCATCCCTCT 725
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 656 CGCTTTATTAGACATCAACAACGAACGTTTTATTCTTCTCTCCGAATCATGCATCCCTCT 715
Query 726 CTTCAACTTCTCCACAGTTTACTCTTTCCTCATCGACTCCACTCTAACCCACGTCGACTC 785
|||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 716 CTTCAACTTCACCACAATTTACTCTTTCCTCATCGAATCCACTCTAACCCACGTCGACTC 775
Query 786 CTACGACCTCACAATCGG-TCGCGTCCGCTATGACCGCCGCATGTATCCTCACATCCGCA 844
|||||||||| | || || | ||||||| |||||||||||||||||||||||||||| ||
Sbjct 776 CTACGACCTCCCCATTGGCT-GCGTCCGTTATGACCGCCGCATGTATCCTCACATCCACA 834
Query 845 TGCACCAATGGCGAAAAGGCTCTCAGTGGTTCGAGCTAGACCGAGCCATGGCCCTCGAGG 904
|||| || ||||| ||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 835 TGCATCACTGGCGCAAAGGCTCTCAGTGGTTCGAGCTAGACAGAGCCATGGCCCTTGAGG 894
Query 905 TAGTCTCTGATACG-TTCTACTGGCCAATCTTTAAAGCTTACTCTCGCTGCCCCGACGAG 963
| ||||| |||||| || ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 895 TCGTCTCCGATACGATT-TACTGGCCAATCTTTAAAGCTTACTCTCGCTACCCCGACGAG 953
Query 964 CACTATATCCCGACGCTACTCAACATGAGGCCGAGCCTTGGGTTGCGTAACGCGAATAGG 1023
||||||||||| ||| || |||| ||||||| ||| || |||| ||| || || || |||
Sbjct 954 CACTATATCCCAACGTTATTCAATATGAGGCTGAGGCTCGGGTCGCGAAATGCCAACAGG 1013
Query 1024 ACGCTTACTTGGACTGACTGGAGCAAGCGTAGGGCTCACCCGAGATTGTTTGGTGAGTGG 1083
|||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1014 ACGCTTACTTGGACAGACTGGAGAAAGCGTAGGGCTCACCCGAGGTTGTTTGGTGAGTGG 1073
Query 1084 GAGGTTAATGTGGAGTTCTTGGAGTGGCTAAGGATGAAGAGTGTTGGTGATTGTAAGAAA 1143
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1074 GAGGTCAATGTGGAGTTCTTGGAGTGGCTAAGGATGAAGAGTGTTGGTGATTGTGAGAAA 1133
Query 1144 AATGGAGAAAATAAGATGAGACTTTGCTTTCTCTTTGCTCGCAAGTTTTCGTCGACTGCT 1203
||||||||||||||||| | | ||||||||||||||||||||||||||||||||||| ||
Sbjct 1134 AATGGAGAAAATAAGATAAAATTTTGCTTTCTCTTTGCTCGCAAGTTTTCGTCGACTACT 1193
Query 1204 TTGGATGAGTTACTCCGGTTAGCATCTATCGTCATGTATTTCTGATCACTCTCTT 1258
|||||| |||| |||||||||||||||| |||||||||||||||| | |||||||
Sbjct 1194 TTGGATAAGTTGCTCCGGTTAGCATCTACCGTCATGTATTTCTGA-C-CTCTCTT 1246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50246004606
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5