BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G68380.1 Length=1343 Score E Sequences producing significant alignments: (Bits) Value Ahg475957 jgi|Araly1|475957|fgenesh2_kg.2__1087__AT1G68380.1 1810 0.0 > Ahg475957 jgi|Araly1|475957|fgenesh2_kg.2__1087__AT1G68380.1 Length=1249 Score = 1810 bits (980), Expect = 0.0 Identities = 1166/1255 (93%), Gaps = 16/1255 (1%) Strand=Plus/Plus Query 11 TTTTAACCCTTAAAACATTGGAAACAAGAATTCTCTTACACATGTATCGGTAGTTGGAAA 70 |||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||| Sbjct 1 TTTTAACCCTTAAAACATTGAAAACAAGAATTCTCCTACACATGTACCGGTAGTTGGAAA 60 Query 71 TGCCGACCCAAAAGGACCAAAACTCACCATTATCTCAAGTGATAGAGCTTCTCAAGAAAC 130 ||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||| Sbjct 61 TGCCGACCCAAAAGGACCAAAACTCACAATTATCTCTACTGATAGAGCTTCTCAAGAAAC 120 Query 131 TACTCCACCATTTCCACAATCTCCTTTTGTATTTCTTCATCCTCTGGATCGGCGTGATAG 190 ||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 121 TACTCAACCATTTCCACAATCTCCTTTTGTATTTCCCCATCCTCTGGATCACCGTGATAG 180 Query 191 TTGGAATCATTGTTTATCCCTCTCTACAAGGATTATCTTCGCCTTCTTCGTTAACCATCC 250 | ||||||||||||||| |||||||||||| | ||||||||||||||||| ||||| ||| Sbjct 181 TCGGAATCATTGTTTATTCCTCTCTACAAGCAATATCTTCGCCTTCTTCGCTAACCGTCC 240 Query 251 AAAGTGTCTCCCAACTCTTCTTTGTAACCCCTCCTCCTCCTATTCTTTCTCCTTCATTTC 310 ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct 241 AAAGTGTCTCCCAACTCTTCTTTGTAACCTCTCCTCCTCCTATTCCTTCTCCTTCATTTC 300 Query 311 AGGACAATGGGCTTGACATGTTTCTGATA-CC-ACTGAAGAACATCATGCAC-GATATGG 367 |||| |||||||| || | |||||||| | || || |||||||||||||||| || |||| Sbjct 301 AGGAAAATGGGCTCGAAAAGTTTCTGA-AGCCAAC-GAAGAACATCATGCACGGA-ATGG 357 Query 368 AAGATAATGAACTTCTGTGGAGAGCTTCAATGGATCCTAAGATCAG-GGATTACCCTTAT 426 |||| ||||| |||||||||||||||||||||||||| |||||||| || |||||||||| Sbjct 358 AAGACAATGAGCTTCTGTGGAGAGCTTCAATGGATCCCAAGATCAGAGG-TTACCCTTAT 416 Query 427 CCTAGAATCCCGAAGGTTGCTTTCATGTTCTTGACTTGGGGACCTTTACCTTTGGCTCCT 486 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 CCTAGAATCCCAAAGGTTGCTTTCATGTTCTTGACTTGGGGACCTTTACCTTTGGCTCCT 476 Query 487 CTATGGGAAAGGTTCTTTCGAGGTCATGAAGGTCTTTTCACTATCTACGTTCACACCAAT 546 || ||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 477 CTTTGGGAAAGGTTCTTTCGTGGGCATGAAGGTCTTTTCACTATCTACGTTCACACCAAT 536 Query 547 TCGTCTTACGACGAGTTCATGC-CGCAAGACTCTGTGTTTTATGGCCGCCGTATTCCAAG 605 |||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||| Sbjct 537 TCGTCTTACGACGAGTTCATGCTC-CAAGGCTCTGTGTTTTATGGCCGCCGTATTCCAAG 595 Query 606 CAAGAGAGTGGATTGGGGAAACGCAAACATGGTAGAAGCAGAACGAAGGTTATTAGCAAA 665 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 596 CAAGAGAGTGGATTGGGGAAACGCAAACATGGTAGAAGCAGAACGAAGGTTACTAGCAAA 655 Query 666 CGCTTTATTAGACATCAACAACGAACGTTTCATTCTTCTCTCCGAATCATGCATCCCTCT 725 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 656 CGCTTTATTAGACATCAACAACGAACGTTTTATTCTTCTCTCCGAATCATGCATCCCTCT 715 Query 726 CTTCAACTTCTCCACAGTTTACTCTTTCCTCATCGACTCCACTCTAACCCACGTCGACTC 785 |||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 716 CTTCAACTTCACCACAATTTACTCTTTCCTCATCGAATCCACTCTAACCCACGTCGACTC 775 Query 786 CTACGACCTCACAATCGG-TCGCGTCCGCTATGACCGCCGCATGTATCCTCACATCCGCA 844 |||||||||| | || || | ||||||| |||||||||||||||||||||||||||| || Sbjct 776 CTACGACCTCCCCATTGGCT-GCGTCCGTTATGACCGCCGCATGTATCCTCACATCCACA 834 Query 845 TGCACCAATGGCGAAAAGGCTCTCAGTGGTTCGAGCTAGACCGAGCCATGGCCCTCGAGG 904 |||| || ||||| ||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct 835 TGCATCACTGGCGCAAAGGCTCTCAGTGGTTCGAGCTAGACAGAGCCATGGCCCTTGAGG 894 Query 905 TAGTCTCTGATACG-TTCTACTGGCCAATCTTTAAAGCTTACTCTCGCTGCCCCGACGAG 963 | ||||| |||||| || ||||||||||||||||||||||||||||||| |||||||||| Sbjct 895 TCGTCTCCGATACGATT-TACTGGCCAATCTTTAAAGCTTACTCTCGCTACCCCGACGAG 953 Query 964 CACTATATCCCGACGCTACTCAACATGAGGCCGAGCCTTGGGTTGCGTAACGCGAATAGG 1023 ||||||||||| ||| || |||| ||||||| ||| || |||| ||| || || || ||| Sbjct 954 CACTATATCCCAACGTTATTCAATATGAGGCTGAGGCTCGGGTCGCGAAATGCCAACAGG 1013 Query 1024 ACGCTTACTTGGACTGACTGGAGCAAGCGTAGGGCTCACCCGAGATTGTTTGGTGAGTGG 1083 |||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 1014 ACGCTTACTTGGACAGACTGGAGAAAGCGTAGGGCTCACCCGAGGTTGTTTGGTGAGTGG 1073 Query 1084 GAGGTTAATGTGGAGTTCTTGGAGTGGCTAAGGATGAAGAGTGTTGGTGATTGTAAGAAA 1143 ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1074 GAGGTCAATGTGGAGTTCTTGGAGTGGCTAAGGATGAAGAGTGTTGGTGATTGTGAGAAA 1133 Query 1144 AATGGAGAAAATAAGATGAGACTTTGCTTTCTCTTTGCTCGCAAGTTTTCGTCGACTGCT 1203 ||||||||||||||||| | | ||||||||||||||||||||||||||||||||||| || Sbjct 1134 AATGGAGAAAATAAGATAAAATTTTGCTTTCTCTTTGCTCGCAAGTTTTCGTCGACTACT 1193 Query 1204 TTGGATGAGTTACTCCGGTTAGCATCTATCGTCATGTATTTCTGATCACTCTCTT 1258 |||||| |||| |||||||||||||||| |||||||||||||||| | ||||||| Sbjct 1194 TTGGATAAGTTGCTCCGGTTAGCATCTACCGTCATGTATTTCTGA-C-CTCTCTT 1246 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50246004606 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5