BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68390.1
Length=1454
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475958 jgi|Araly1|475958|fgenesh2_kg.2__1088__AT1G68390.1 2047 0.0
> Ahg475958 jgi|Araly1|475958|fgenesh2_kg.2__1088__AT1G68390.1
Length=1432
Score = 2047 bits (1108), Expect = 0.0
Identities = 1306/1400 (93%), Gaps = 20/1400 (1%)
Strand=Plus/Plus
Query 1 GGTATCGTATCTCTTGCCCTTAAAGCAAAGAACTTGTCTCTCCTTCTCCATTCACTCCTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGTATCGTATCTCTTGCCCTTAAAGCAAAGAACTTGTCTCTCCTTCTCCATTCACTCCTC 60
Query 61 TTTTGGAACATCACAAG--CAC-AC--A-ATCCTCTCCGTCTCTGTTTCAATGAAGAACC 114
||||||||||||||||| ||| || | || ||||| |||||||| |||||||||||||
Sbjct 61 TTTTGGAACATCACAAGCACACAACAAAGATTCTCTCTGTCTCTGTCTCAATGAAGAACC 120
Query 115 AAAAGGATCAAAACTCATCATCATTGTCTTCTTCATCACCATCTCTAACAACAAAGCTTC 174
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 121 AAAAGGATCAAAACTCATCATCATTTTCCTCTTCATCACCATCTCTAACAACAAAGCTTC 180
Query 175 TCAATGCTCAATACCATCACTTCCTCAATCTCCTTTCGTATTCCCTTATCCTCTGTTGCG 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCAATGCTCAATACCATCACTTCCTCAATCTCCTTTCGTATTCCCTTATCCTCTGTTGCG 240
Query 235 GTATCATCATCGGCATCCTTCTCCATTCCTCTCTACAAAACTTCTCTTCAAATTCTTCAC 294
|||| ||| |||| |||||||||||||| ||||||||| |||||||||| | ||||||||
Sbjct 241 GTATAATCTTCGGTATCCTTCTCCATTCTTCTCTACAAGACTTCTCTTCCACTTCTTCAC 300
Query 295 TTAGCATCCAACGCATATCTCAGCTATTTATAGtctcttctcttcctccttctcctcctc 354
| |||||||||||||| ||||||| | | | ||| || | | || | | ||||||||
Sbjct 301 TCAGCATCCAACGCATCTCTCAGC--TCT-T--CCTCGTCACCT-CT-C-T-TCCTCCTC 351
Query 355 ctcctcctcctccttctcctccttctGAGCCCGAGCAAAATGGGCTCAAAAGCTTTATTG 414
|||||||||||||||||||||| ||||||| |||| |||||||| || |||||||
Sbjct 352 CTCCTCCTCCTCCTTCTCCTCCATCTGAGCTAGAGCTTGATGGGCTCGAACGCTTTATCA 411
Query 415 AGCCACCGGAGAAGCTTATGCACGACATGGAGGACGAAGAGCTTCTCTGGAGAGCTTCAA 474
||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 412 AGCCACCAGAGAAGCTTATGCACGACATGGAAGACGAAGAGCTTCTATGGAGAGCTTCTA 471
Query 475 TGGCGCCTAAGATCAAGAATTACCCTTTTCCTCGAACGCCAAAGGTTGCTTTCATGTTCA 534
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 472 TGGCACCTAAGATCAAGAATTACCCTTTTCCTCGAACACCAAAGGTTGCTTTCATGTTCA 531
Query 535 TGACAAAGGGTCATTTACCTCTAGCTCGTCTATGGGAGAGATTCTTTCGTGGGCATGAAG 594
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 532 TGACAAAGGGTCATTTACCTCTAGCTCGTCTGTGGGAGAGATTCTTTCGAGGGCATGAAC 591
Query 595 GTCTTTTTACTATCTACGTTCACTCTTATCCTTCTTATAACCAGTCCGATCCCGAAGATT 654
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 592 ATCTTTTTACTATCTACGTTCACTCATATCCTTCTTATAACCAGTCCGATCCCGAAGATT 651
Query 655 CCGTCTTCCGTGGCCGCCACATTCCAAGCAAGAGAGTGGATTGGGGATATGTGAACATGG 714
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 652 CCGTCTTCCATGGCCGCCACATTCCAAGCAAGAGAGTGGATTGGGGATATGTGAATATGG 711
Query 715 TGGAAGCAGAACAAAGATTACTAGCAAATGCTTTATTAGACATATCAAACGAACGATTCG 774
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 712 TGGAAGCAGAACAAAGACTACTAGCAAATGCTTTATTAGACATATCAAACGAACGATTTG 771
Query 775 TACTTCTCTCCGAATCATGCATCCCTCTTTTCAACTTCACCACTGTTTACTCTTACCTTA 834
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 772 TACTTCTCTCCGAATCATGCATCCCTCTTTTCAACTTCACCACTGTTTACTCTTACCTCA 831
Query 835 TTAACTCAACTCAAACTCACGTTGAGTCCTACGACCAACTTGGTGGCGTTGGACGCGGCC 894
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 832 TTAACTCAACTCAAACTCACGTTGAGTCCTATGACCAACTTGGTGGCGTTGGACGTGGCC 891
Query 895 GATACAGCCCTCTAATGCAGCCACATGTCCAGCTACGCCACTGGCGCAAAGGCTCCCAAT 954
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 892 GATACAGCCCTCTAATGCAGCCACATGTCCAGCTACACCACTGGCGCAAAGGCTCCCAGT 951
Query 955 GGATCGAAGTGGACCGTGCCATGGCTCTTGAGATTATCTCCGATAGAATCTACTGGCCTC 1014
|| |||| |||||||||| ||||||||||||||| |||||||||||||| || |||||||
Sbjct 952 GGTTCGAGGTGGACCGTGACATGGCTCTTGAGATCATCTCCGATAGAATATATTGGCCTC 1011
Query 1015 TCTTTTATAGTTATTGCCACCATGGTTGCTACGCCGACGAGCACTATATTCCTACACTCC 1074
||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||| |
Sbjct 1012 TCTTTTATAGTTACTGCCACCACGGTTGCTACGCGGACGAGCACTACATTCCTACACTAC 1071
Query 1075 TCAACATCAAATCAAGCCTGAAACGGCGCAACTCCAACCGGACTCTCACGTGGGTCGACT 1134
|||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||
Sbjct 1072 TCAACATCAAATCAAGCCTGAACCATCGCAACTCGAACCGGACTCTCACGTGGGTCGACT 1131
Query 1135 GGTCGAAAGGTGGCCCGCACCCTAACCGGTTTATTAGACACGAGGTGACTGCGGAGTTCA 1194
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1132 GGTCGAAAGGTGGCCCGCACCCGAACCGGTTTATTAGACACGAGGTGACTGCAGAGTTCA 1191
Query 1195 TGGAGAACCTAAGGAGTGGTGGTGAGTGTCTCTACAATGGAGAAGAGACGAATATTTGTT 1254
||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 TGGAGAATCTGAGGAGTGGAGGTGAGTGTCTCTACAATGGAGAAGAGACGAATATTTGTT 1251
Query 1255 ATTTATTTGCTCGCAAGTTCTTGCCTACTGCTCTCGACCGGTTGCTCAGGCTTTCACGTA 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 ATTTATTTGCTCGCAAGTTCTTGCCTACTGCTCTCGACCGGTTGCTCAGGCTTTCACGTA 1311
Query 1315 CTGttttacatttctgattatt-tt-t-cttttttcatatatttttttaatttttCAATT 1371
|||||||| ||||||||||||| || | ||| |||||| ||||||||| |||||||||||
Sbjct 1312 CTGTTTTATATTTCTGATTATTATTATTCTTCTTTCATTTATTTTTTTTATTTTTCAATT 1371
Query 1372 CTTCACCGTAATATTGTATA 1391
| ||| |||||||||||||
Sbjct 1372 -T-CACTGTAATATTGTATA 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54392869860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5