BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68400.1
Length=2405
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475959 jgi|Araly1|475959|fgenesh2_kg.2__1089__AT1G68400.1 3099 0.0
> Ahg475959 jgi|Araly1|475959|fgenesh2_kg.2__1089__AT1G68400.1
Length=2144
Score = 3099 bits (1678), Expect = 0.0
Identities = 2013/2169 (93%), Gaps = 45/2169 (2%)
Strand=Plus/Plus
Query 26 CAACAATGGCCAAAAGctctttcttcaacaagcatttgcttctctctcttc-tcattctt 84
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||
Sbjct 1 CAACAATGGCCAAAAGCTCTTTCTTCAATAAGCATTTGCTTCTCTCTCTTCTTCACTGTT 60
Query 85 ctccaaagctgtctactctcttcttcttcAA-GTACCGATTCAGAAACTCTCTTGAACTT 143
| | || | | || ||||||||||||| | |||| ||||||||||||||||||||
Sbjct 61 GT-C--TCCT-T-T-CT-TCTTCTTCTTCAACCT-CCGACTCAGAAACTCTCTTGAACTT 112
Query 144 CAAACTCACCGCAGATTCCACCGGAAAACTAAACTCATGGAACACAACAACAAACCCATG 203
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 113 CAAACTCACTGCAGATTCCACCGGAAAACTAAACTCAAGGAACACAACAACAAACCCATG 172
Query 204 CCAATGGACCGGAGTCTCCTGCAACCGCAACAGAGTCACACGACTCGTACTCGAAGACAT 263
||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||
Sbjct 173 TCAATGGACCGGAGTCTCCTGCAACCGCAACAGAGTCACAAGACTTGTCCTCGAAGACAT 232
Query 264 C-AATCTCACCGGGTCAATCTCATCACTAACCTCACTCACATCACTCAGAGTTCTCAGTC 322
| || |||||||||||||||||| |||||||||||||||| || ||||||||||||||||
Sbjct 233 CGAA-CTCACCGGGTCAATCTCACCACTAACCTCACTCACTTCCCTCAGAGTTCTCAGTC 291
Query 323 TGAAACATAACAATCTCTCTGGTCCAATCCCAAACCTCTCGAACCTCACAGCTTTAAAGC 382
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TTAAACATAACAATCTCTCTGGTCCAATCCCAAACCTCTCGAACCTCACAGCTTTAAAGC 351
Query 383 TTCTCTTTTTATCAAACAACCAATTCTCCGGTAACTTCCCCACTTCAATCACTTCACTCA 442
|||||||||||||| |||||||||||||||||||||| || | |||||||||||||||
Sbjct 352 TTCTCTTTTTATCACACAACCAATTCTCCGGTAACTTTCCTTCATCAATCACTTCACTCG 411
Query 443 CTCGTCTCTACCGTCTTGATCTCTCTTTCAACAACTTCTCCGGCCAGATTCCACCGGATT 502
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 412 CTCGTCTCTACCGTCTTGATCTCTCTTTCAACAACTTCTCCGGCGAGATTCCACCGGATT 471
Query 503 TAACCGATTTAACCCATCTCCTCACTCTCCGGTTAGAATCAAACCGGTTCTCCGGTCAAA 562
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 472 TAACCAATTTAAACCATCTCCTCACTCTCCGGTTAGAATCAAACCGGTTCTCCGGTCAGA 531
Query 563 TACCGAACATCAACCTCTCCGATTTACAAGACTTCAACGTCTCCGGTAACAACTTTAACG 622
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 TACCGAACATCATCATCTCCGATTTACAAGACTTCAACGTCTCCGGTAACAACTTTAACG 591
Query 623 GTCAGATACCAAATTCATTGTCTCAATTCCCTGAATCAGTCTTTACACAAAACCCATCTC 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 GTCAGATACCAAATTCATTGTCTCAATTCCCTGAATCAGTCTTTACACAAAACCCATCTC 651
Query 683 TCTGTGGAGCT-CCATTGCTGAAATGCACGAAACTCTCTAGTGACCCGACTAAACCGGGT 741
||||||||| | |||||||| |||||||| || |||||||| ||||||||||||||||||
Sbjct 652 TCTGTGGAG-TACCATTGCTAAAATGCACCAAGCTCTCTAGCGACCCGACTAAACCGGGT 710
Query 742 CGACCCGATGAAGCAAAGGCTTCTCCTTTAAACAAGC-CGGAAACTGTACCTTCATCTCC 800
|||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 711 CGACCCGATGGAGCAAAGGCTTCTCCTTTAAACAA-CTCGGAAACTGTACCTTCATCTCC 769
Query 801 AACTTCAATTCACGGCGGCGACAAAAGCAACAACACATCAAGAATCAGCACCATCTCACT 860
||||||||||||||||||||||||||||| | || | |||||||||||||||||||
Sbjct 770 AACTTCAATTCACGGCGGCGACAAAAGCA-CGACG-A----GAATCAGCACCATCTCACT 823
Query 861 TA-TAGCTATCATCCTCGGAGACTTTATTATCTTAAGCTTTGTCTCTCTTCTTCTCTACT 919
| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 824 -AGTAGCTATCATCCTCGGAGACTTCATTATCTTATGCTTTGTCTCTCTTCTTCTCTACT 882
Query 920 ACTGTTTCTGGAGACAATACGCAGTGAACAAGAAGAAACACTCGAAGATTCTTGAAGGAG 979
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 883 ACTGTTTCTGGAGACAATACGCAGTGAACAAGAAGAAACACTCAAAGGTTCTTGAAGGAG 942
Query 980 AAAAGATTGTCTACTCATCAAATCCTTACCCAACATCAACGCAAAACAACAACAATCAGA 1039
| |||||||| |||||||||| |||||||||||||||| | |||||||||||||||||||
Sbjct 943 AGAAGATTGTTTACTCATCAAGTCCTTACCCAACATCATCCCAAAACAACAACAATCAGA 1002
Query 1040 ATCAACAAGTTGGTGATAAGGGTAAAATGGTCTTTTTCGAAGGAACTAGACGTTTTGAG- 1098
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 ATCAACAAGGTGGTGAGAAGGGTAAAATGGTCTTTTTCGAAGGAACTAGACGTTTTGAGC 1062
Query 1099 TTAGAAGATCTTCTCCGAGCATCGGCGGAGATGTTAGGGAAAGGAGGATTCGGGACGGCG 1158
|| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1063 TT-GAAGATCTTCTCAGAGCATCGGCGGAGATGTTAGGTAAAGGAGGATTCGGGACGGCG 1121
Query 1159 TACAAGGCGGTTCTTGAGGACGGCAATGAGGTTGCGGTGAAGCGG-TTAAAAGATGCGGT 1217
||||| || || ||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 1122 TACAAAGCCGTGCTTGAGGACGGCAATGAGGTTGCGGTGAAGCGGCTTAAA-GACGCGGT 1180
Query 1218 GACGGTGGCCGGaaaaaaaGAGTTTGAGCAACAGATGGAGGTTTTAGGAAGGCTTCGTCA 1277
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1181 TACGGTGGCCGGAAAAAAAGAGTTTGAGCAACAAATGGAGGTTTTAGGAAGGCTTCGTCA 1240
Query 1278 TACTAATCTTGTGAGCTTAAAGGCTTATTACTTTGCTAGAGAAGAGAAGCTTCTTGTTTA 1337
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1241 TACTAATCTTGTGAGCTTAAAAGCTTATTACTTTGCTAGAGAAGAGAAGCTTCTTGTTTA 1300
Query 1338 TGATTACATGCCTAATGGTAGTCTCTTCTGGCTTCTCCATGGAAACCGTGGACCGGGTCG 1397
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1301 TGATTACATGCCTAATGGTAGTCTCTTCTGGCTTCTCCATGGAAACCGTGGACCCGGTAG 1360
Query 1398 GACTCCTTTGGACTGGACCACGCGCCTTAAGATCGCAGCGGGGGCGGCGCGTGGCTTAGC 1457
|||||| |||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 1361 GACTCCATTGGACTGGACCACGCGCCTTAAGATTGCAGCGGGTGCAGCGCGTGGCTTAGC 1420
Query 1458 TTTCATCCACGGTTCGTGTAAAACCTTGAAGCTCACGCACGGTGATATCAAATCCACCAA 1517
||||||||| || |||||||| ||||| |||||||| |||||||| ||||||||||||||
Sbjct 1421 TTTCATCCATGGCTCGTGTAATACCTTAAAGCTCACACACGGTGACATCAAATCCACCAA 1480
Query 1518 TGTGCTACTAGACCGATCAGGCAACGCTCGTGTTTCGGATTTCGGGCTATCTATCTTCGC 1577
||||||||| || |||||||||| ||||||||||| ||||| ||||||||||| |||||
Sbjct 1481 TGTGCTACTCGATAGATCAGGCAATGCTCGTGTTTCCGATTTTGGGCTATCTATTTTCGC 1540
Query 1578 GCCATCGCAAACCGTTGCAAAATCTAATGGCTACCGTGCACCGGAGCTGATTGATGGCCG 1637
||||| |||||| ||||| ||||| ||||||||||||||||||||||||| |||||| ||
Sbjct 1541 GCCATTGCAAACTGTTGCTAAATCCAATGGCTACCGTGCACCGGAGCTGACTGATGGTCG 1600
Query 1638 AAAACACACTCAGAAA-TCCGACGTTTACTCATTTGGAGTGCTCCTTTTGGAGATTCTCA 1696
||||||||| || ||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1601 AAAACACACGCA-AAAGTCTGACGTTTACTCATTTGGAGTGCTTCTTTTGGAGATTCTCA 1659
Query 1697 CTGGAAAATGTCCTAATATGGTGGAGACGGGTCACTCGGGTGGTGCGG-TGG-------- 1747
|||| ||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1660 CTGGGAAATGTCCTAATATGGTGGAGACGGGTCATTCGGGTGGTGCGGGTGGGGCGGTGG 1719
Query 1748 ATTTACCAAGATGGGTCCAATCAGTGGTGAGAGAGGAGTGGACGGCTGAAGTGTTTGATT 1807
||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1720 ATTTACCGAGATGGGTCCAGTCGGTGGTGAGAGAGGAGTGGACGGCTGAAGTGTTTGATT 1779
Query 1808 TGGAGCTGATGAGGTATAAGGATATAGAGGAAGAAATGGTGGGGTTGTTGCAGATTGCTA 1867
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1780 TGGAGCTTATGAGGTATAAGGATATAGAGGAAGAGATGGTGGGGTTGTTGCAGATTGCTA 1839
Query 1868 TGGCGTGTACCGCAGTTGCCGCGGATCATCGTCCGAAGATGGGTCATGTGGTGAAGTTGA 1927
||||||| || || ||||| |||||||| ||||| |||||||||||||| ||||||||||
Sbjct 1840 TGGCGTGCACGGCGGTTGCGGCGGATCACCGTCCAAAGATGGGTCATGTTGTGAAGTTGA 1899
Query 1928 TAGAGGATATACGTGGTGGTGGCTCTGAGGCCTCGCCGTGCAATGATGGGATCAATTCTG 1987
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1900 TAGAGGATATACGTGGTGGTGGCTCTGAGACCTCACCGTGCAATGATGGGATCAATTCTG 1959
Query 1988 CGGTGGACTCGCCGTGCTTGTCCGAGGACACTTGCGGTGGGACTACGAGTCAGTAGTAAG 2047
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1960 CGGTGGACTCACCGTGCTTGTCCGAGGACACTTGCGGTGGGACTACGAGTCAGTAGTAAG 2019
Query 2048 ATTTC-TTTACTTGAAAAATGTAAATCACGTGCCTAGAATCTTGACTTTTGTCATTCGTC 2106
||| | ||||||| ||||||||||||||||||| |||||||||||||||| ||||| ||
Sbjct 2020 ATT-CGTTTACTTAAAAAATGTAAATCACGTGCTTAGAATCTTGACTTTT--CATTCTTC 2076
Query 2107 TGAAATCCTAACACTTCTAGAGTCGTAGGCTTTTGTTCTTTGTTTGTTTCCTTTA-GTTT 2165
||||||| |||||||||||| |||||||||||| ||| ||| |||||||| |||| ||||
Sbjct 2077 TGAAATCATAACACTTCTAGTGTCGTAGGCTTT-GTTTTTTCTTTGTTTCTTTTAAGTTT 2135
Query 2166 GTAACACGA 2174
|||| ||||
Sbjct 2136 GTAATACGA 2144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90616692855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5