BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68410.1
Length=1796
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926119 jgi|Araly1|926119|scaffold_201680.1 2102 0.0
> Ahg926119 jgi|Araly1|926119|scaffold_201680.1
Length=1357
Score = 2102 bits (1138), Expect = 0.0
Identities = 1286/1358 (95%), Gaps = 7/1358 (1%)
Strand=Plus/Plus
Query 204 GTCTTTCAAGAAGTTGTTACAATGGCGTCTAGAGAAGGAAAGAGACG---T-A--ATCAT 257
|||||| |||||||| |||||||||||||||||||||||||||||| | | |||||
Sbjct 1 GTCTTT-GAGAAGTTGCTACAATGGCGTCTAGAGAAGGAAAGAGACGTAATCATCATCAT 59
Query 258 AATCATGATGATGAGAAGCTTGTGCCTCTTGCTGCTTTGATAAGTAGAGAGACGAAAGCT 317
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AATCATCATGATGAGAAGCTTGTGCCTCTTGCTGCTTTGATAAGTAGAGAGACGAAAGCT 119
Query 318 GCTAAAATGGAGAAACCGATTGTGAGATTTGGACAAGCTGCTCAATCTAGGAAAGGAGAA 377
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GCTAAAATGGAGAAACCTATTGTGAGATTTGGACAAGCTGCTCAATCTAGGAAAGGAGAA 179
Query 378 GATTATGTCTTGATCAAGACTGATAGTCTTCGTGTTCCTTCCAATTCTTCAACTGCTTTC 437
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 180 GATTATGTCTTGATCAAGACTGATAGTCTTCGAGTTCCTTCCAATTCTTCAACTGCTTTC 239
Query 438 TCTGTTTTTGCGGTATTTGATGGGCATAATGGAAAAGCGGCAGCGGTTTATACAAGGGAG 497
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 240 TCTGTTTTTGCGGTATTTGATGGGCACAATGGAAAAGCAGCAGCGGTTTATACAAGGGAG 299
Query 498 AATCTGTTGAACCATGTTATTAGTGCTCTTCCTAGTGGGCTTAGCCGTGACGAGTGGCTT 557
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 300 AATCTGTTGAATCATGTTATTAGTGCTCTTCCTAGTGGGCTTAGCCGTGATGAGTGGCTT 359
Query 558 CACGCTTTACCTCGTGCATTAGTTTCTGGATTTGTGAAGACTGATAAGGAGTTTCAGAGC 617
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 360 CATGCTTTACCTCGTGCATTAGTTTCTGGATTTGTGAAGACAGATAAGGAGTTTCAGAGC 419
Query 618 AGAGGGGAAACTTCTGGAACAACAGCAACGTTTGTGATAGTAGATGGATGGACTGTGACC 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGAGGGGAAACTTCTGGAACAACAGCAACGTTTGTGATAGTAGATGGATGGACTGTGACC 479
Query 678 GTTGCATGTGTTGGCGACTCGCGCTGCATCTTGGATACTAAGGGTGGTTCAGTTTCTAAC 737
||||| |||||||| || ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 480 GTTGCGTGTGTTGGGGATTCGCGTTGCATCTTGGATACTAAGGGTGGTTCAGTTTCCAAC 539
Query 738 CTTACTGTTGATCACAGGCTTGAAGATAATACAGAAGAGAGGGAACGCGTTACTGCGAGT 797
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 540 CTTACTGTGGATCACAGGCTTGAAGATAATACAGAAGAGAGGGAACGGGTTACTGCTAGT 599
Query 798 GGTGGAGAAGTTGGCAGGCTAAGCATTGTTGGAGGCGTTGAGATTGGTCCACTACGGTGT 857
||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 600 GGTGGAGAAGTTGGCAGGCTAAGCATTGTCGGAGGTGTTGAGATTGGTCCTTTACGGTGT 659
Query 858 TGGCCTGGAGGTCTCTGCCTTTCAAGGTCTATTGGGGATATGGATGTTGGGGAGTTCATT 917
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 660 TGGCCTGGAGGTCTCTGCCTTTCAAGGTCTATCGGGGATATGGATGTCGGGGAGTTCATT 719
Query 918 GTTCCAGTTCCCTTTGTAAAGCAAGTGAAGCTATCAAACCTTGGAGGAAGGCTTATCATT 977
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||
Sbjct 720 GTTCCAGTTCCCTTTGTAAAGCAAGTGAAGCTATCAAACATTGGCGGAAGGCTTATTATC 779
Query 978 GCATCAGATGGCATATGGGATGCTCTCTCCTCAGAAGTCGCAGCTAAAACTTGCCGTGGG 1037
|| || |||||||||||||||||||||||||||||| | || || |||||||||||||
Sbjct 780 GCCTCGGATGGCATATGGGATGCTCTCTCCTCAGAATTGGCTGCCCAAACTTGCCGTGGA 839
Query 1038 TTATCTGCTGAACTTGCTGCTAGACAAGTAGTTAAGGAAGCATTGAGAAGAAGGGGACTT 1097
||| | ||||| || ||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 840 TTACCCGCTGATCTAGCTGCAAGACAAGTAGTTAAGGAAGCATTGAGAAAAAGGGGACTT 899
Query 1098 AAGGATGACACAACTTGCATTGTGGTCGACATAATCCCACCCGAAAACTTCCAAGAACCA 1157
|||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 900 AAGGATGACACAACCTGCATTGTGGTTGACATAATCCCACCCGAGAACTTCCAAGAGCCA 959
Query 1158 CCGCCTTCACCTCCTAAGAAGCACAACAACTTCTTTAAATCATTACTCTTCAGAAAGAAA 1217
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 960 CCGCCTTCACCTCCTAAGAGGCACAACAACTTCTTTAAATCATTACTCTTTAGAAAGAAA 1019
Query 1218 TCAAACTCATCTAACAAACTCTCCAAGAAACTTTCCACTGTTGGTATTGTTGAAGAGCTC 1277
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1020 TCAAACTCATCTAACAAACTCTCCAAGAAACTTTCCACTGTTGGTATCGTTGAAGAACTC 1079
Query 1278 TTCGAAGAAGGTTCGGCAATGCTCGCTGAAAGGTTAGGATCAGGTGACTGTTCTAAGGAA 1337
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1080 TTCGAAGAAGGTTCCGCAATGCTCGCTGAAAGGTTAGGATCTGGTGACTGTTCTAAGGAA 1139
Query 1338 TCAACAACAGGAGGAGGGATATTCACGTGTGCCATATGCCAACTAGACCTAGCTCCAAGC 1397
|||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||
Sbjct 1140 TCAACAACAGGAGGAGGGATATTCACGTGTGCGATATGTCAACTAGACTTAGCTCCAAGC 1199
Query 1398 GAGGGAATATCAGTCCACGCAGGTTCAATCTTCTCGACAAGTCTAAAACCGTGGCAAGGA 1457
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GAGGGAATATCAGTCCATGCAGGTTCAATCTTCTCGACAAGTCTAAAACCGTGGCAAGGA 1259
Query 1458 CCGTTCTTATGCACAGATTGTCGTGACAAAAAAGACGCGATGGAAGGGAAACGTCCAAGT 1517
|||||||| |||||||| || ||||||||||| ||||| ||||||||||||||||||||
Sbjct 1260 CCGTTCTTGTGCACAGACTGCCGTGACAAAAAGGACGCAATGGAAGGGAAACGTCCAAGC 1319
Query 1518 GGAGTTAAAGTCATCTAGATTGAAAGATGGTAATCTGC 1555
|||||||||||||| |||| ||||||||||||||||||
Sbjct 1320 GGAGTTAAAGTCATATAGAATGAAAGATGGTAATCTGC 1357
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67419733650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5