BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G68430.1

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926122 jgi|Araly1|926122|scaffold_201683.1                        654    0.0  


> Ahg926122 jgi|Araly1|926122|scaffold_201683.1
Length=478

 Score =  654 bits (354),  Expect = 0.0
 Identities = 436/475 (92%), Gaps = 7/475 (1%)
 Strand=Plus/Plus

Query  4    TTTCCAAATTCTATGGCTACACTGCAGAGATTCAAGTTCTTGGGGACGCAGTGCGGAGTA  63
            |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  10   TTTCCAAA-TCCATGGCGACACTGCAGAGATTCAAGTTCTTGGGGACGCAGTGCGGAGTA  68

Query  64   GCAGCACAAAGCCCGACACGAAGTCCGAGTCCGAGGACAAGTCCATTGGTACAGCTTCGA  123
            |||||||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct  69   GCAGCACAGAGCCCGACACGAAGTCCGAGTCCAAGGACAAGTCCGTTGGTACAACTTCGA  128

Query  124  CGAAAGAAGACAACTTTAAAGATGCTTTTGAGTCTTGCATCTCCGAGTCGCCGAGAGCAG  183
            | |||||| |||||| ||||||||||||||||||||||||| ||||| || |||||||||
Sbjct  129  CAAAAGAAAACAACTCTAAAGATGCTTTTGAGTCTTGCATCGCCGAGCCGTCGAGAGCAG  188

Query  184  CAACCGTTGATTCATCATCATCACAAGGACGTAGCCGGACGGAAACTTAAAGACTTATTC  243
            |||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct  189  CAACCGTTGATTCAACATCATCACAAGGACGTAGCAGGACGCAAACTTAAAGACTTATTC  248

Query  244  GTCTCTTCGTCTTCCGCAGAGGAAGAACAAGAAGAGGACGAGAGACCAAAGGGGAAAACA  303
            |||||||||||||||| ||||||||||   |||||||| |||||||| ||||||||||||
Sbjct  249  GTCTCTTCGTCTTCCGTAGAGGAAGAA---GAAGAGGAGGAGAGACCGAAGGGGAAAACA  305

Query  304  AAAGAAGAAGTTCTTGCAGCCATGGCGGCTAAACTGAATGCAGCTTCAAGATTACAATGT  363
            |||||||||||||||||||||||||| |||||| |||||||| |  | ||||||||||||
Sbjct  306  AAAGAAGAAGTTCTTGCAGCCATGGCAGCTAAATTGAATGCAACCGCTAGATTACAATGT  365

Query  364  GAGTCTGCTGATGCAGCACCAGTTTGGTTCGGATTCAGCAAACGGCTTCTTCAGCGAGCT  423
            |||||  ||||||||||||| | |||||||||||||||||| ||||||||||||||||||
Sbjct  366  GAGTCCACTGATGCAGCACCGGCTTGGTTCGGATTCAGCAAGCGGCTTCTTCAGCGAGCT  425

Query  424  TGGCGTCCTAAACTTGGTACCATTCAC-GAGTAATGTAACCCAATTTTCTTCTCt  477
            ||||| ||||| || |||||||||| | ||||||||||||| |||||||||||||
Sbjct  426  TGGCGACCTAAGCTCGGTACCATTC-CTGAGTAATGTAACC-AATTTTCTTCTCT  478



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19688283924


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5