BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68440.1
Length=1241
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475964 jgi|Araly1|475964|fgenesh2_kg.2__1094__AT1G68440.1 1842 0.0
> Ahg475964 jgi|Araly1|475964|fgenesh2_kg.2__1094__AT1G68440.1
Length=1219
Score = 1842 bits (997), Expect = 0.0
Identities = 1166/1242 (94%), Gaps = 33/1242 (3%)
Strand=Plus/Plus
Query 10 ttttttCTCTCTTTCTCATAACAACaaaaaaacaaaaaaaaaaCCTAATTAGTTTT-TTC 68
|||||| |||||||||||| |||||||||| ||||||||| ||||||||||||| |||
Sbjct 1 TTTTTT-TCTCTTTCTCAT---AACAAAAAAA-AAAAAAAAACCCTAATTAGTTTTCTTC 55
Query 69 TTTCTGCAGAGATTATGGAGGTACCGGTGATTAATAGAATAAGAGATTTCGAAGTTGGTA 128
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 56 TTCCTGCAGAGATTATGGAGGTACCGGTGATTAATAGAATAAGAGATTTCGAAGTTGGTA 115
Query 129 TAAACTCGATTAATGATCCTTCGTTTCTTTCTCGATCTGTTGCTGTTTCCGGAATCGGAA 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 TAAACTCGATTAATGATCCTTCGTTTCTTTCTCGATCTGTTGCTGTTTCCGGAATCGGAA 175
Query 189 AGCTACACCAAGCTTATGGTTTTTGGAAATGGGGAGCTTTGATTATCGCATTTCTAGCTT 248
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 176 AGCTACACCAAGCTTATGGTTTTTGGAAATGGGGAGCTTTGATTATTGCATTTCTAGCTT 235
Query 249 ATTTCACCAACTTTGTTAGTAAACTCAACAGTCTAGTTGTTAGGTTAAGAAAAATAGATG 308
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 236 ATTTCACAAACTTTGTTAGTAAACTCAACAGTTTAGTTGTTAGGTTAAGAAAAATAGATG 295
Query 309 TCTCTGTTTCCTCTCCAACTCTTTTTGATGATTACGATAGCGATTCCGATGTTTCTTGTT 368
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TCTCTGTTTCTTCTCCAACTCTTTTTGATGATTACGATAGCGATTCCGATGTTTCTTGTT 355
Query 369 CCTCTACCGTCTCCTCTGACGATGAAAAAGACGAAGAAGATGAGGCTGATGATGAAGATG 428
| ||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 356 CGTCTACCGTCTCATCTGACGATGAAGAAGACGAAGAAGATGAGGATGATGATGAAGATG 415
Query 429 AGGATGTTGACTCGATCTTTAATCGAAGACGAGTCAACGGAGGTTTCCGCGTTAGAGGAT 488
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 416 AGGATGTTGACTCGATCTTTAATCGAAGACGAGTCAACGGAGGTTTCCGCGTGAGAGGAT 475
Query 489 CTGATTATTACGATGATGATGATGATCAGGGAGACAATGGTAATTGCACATGGATGGGGA 548
|||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 476 CTGATTATTATGATGATGATGATGGTCAGGGAGAAAATGGTAATTGCACATGGATGGGGC 535
Query 549 GGCGATATAGTGGTAGTTTTGGAGATTTGTTCTCATGGCCTGATCTTGGTGGGATTGGTT 608
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 536 GGCGATGTAGTGGTAGTTTTGGAGATTTGTTCTCGTGGCCTGATCTTGGTGGGATTGGTT 595
Query 609 CGAGTGGAGTCGTGAAGCTTTGGGATCATTTAGATATCGATGGCGATGAT------CATG 662
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 596 CGAGTGGAGTCGTGAAGCTTTGGGATCATTTAGATATTGATGGCGATGATGATGATCATG 655
Query 663 AGAATGTTGTGGCAACGTTTCTCAAGAACTATAACTCAACCTCGTCACCGtttttttGGG 722
||||||||||||| |||||||||||||| | || ||| |||||||| | |||||||||
Sbjct 656 AGAATGTTGTGGCCACGTTTCTCAAGAATTGTAGCTCGACCTCGTCTC--TTTTTTTGG- 712
Query 723 CGGCGGAGAAAAAAGGTGTTGACGCCGTTAAAGTGAAGGCGTGTGATCCACGCGCCGGTT 782
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 713 CGGCGGAGAAGAAAGGTGTTGACGCCGTTAAAGTGAATGCGTGTGATCCACGCGCCGGTT 772
Query 783 TTCGGATGCCGGCTTTGCTCGCGGAGTGGAGGCAGCCGGGGCGGTTGTTAGGGAATATAA 842
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 773 TTCGGATGCCGGCTTTGCTTGCGGAGTGGAGGCAGCCGGGGCGGTTGTTAGGGAATATTA 832
Query 843 TCGGAGTTGATACCGGTGGTGTGGAGAAAGTATACGTCAGGGATGATGTTAGCGGAGAGA 902
||||||||||| | ||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 833 TCGGAGTTGATGCTGGTGGTGTGGAGAAAGTTTACGTCAGGGATGATGTTAGTGGAGAAA 892
Query 903 TAGCCGTGGGAGATTTGAGGAAGTTTAACGGTGTGTTGACGGACTTGACGGAATGTGAGG 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 TAGCCGTGGGAGATTTGAGGAAGTTTAACGGTGTGTTGACGGACTTGACGGAATGTGAGG 952
Query 963 CTGAGACTTGGTGGGACGCTGACGTCCTTATCTCGGGCTGATGGAATCCTTGACGAGAGA 1022
|||||||||||||||||||||||||| |||||||||||||| ||| | |||||||||||
Sbjct 953 CTGAGACTTGGTGGGACGCTGACGTCGTTATCTCGGGCTGACGGATTTGTTGACGAGAGA 1012
Query 1023 AAATATTGGTTGGGACGGTTTTGTCTTAAAGTTAAGAGG-ACGGACGAAAGATTCAACGC 1081
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1013 AGATATTGGTTGGGACGGTTTTGTCTTAAAGTTAAGAGGGACGGACGAAAGATTCAACGC 1072
Query 1082 CAAAAAGAAGTGTTAAAGATTAATGAGAACGACGCAACGTTTTGTAAATAATTTGTCTGT 1141
|||| | ||| ||||| | ||||||||||||||| |||||||||||||||||||||
Sbjct 1073 -AAAA-G---TGTAAAAGA--A-TGAGAACGACGCAACATTTTGTAAATAATTTGTCTGT 1124
Query 1142 TTGCTTCTCTGCGATTTTTATTTTAAAATTTTAGTTTTGATTGAATAAAAATCAGCGTCA 1201
||||||||||||||||| ||||||||||||||||||||||| |||||||| | | |||
Sbjct 1125 TTGCTTCTCTGCGATTT--ATTTTAAAATTTTAGTTTTGATTAAATAAAAA-C--C-TCA 1178
Query 1202 GATTAATAAAAGTGTT--TGTGTGTTTGGTCGGTTACTAGTT 1241
||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1179 TATTAATAAA-GTGTTCGTGTGTGTTTGGTCGGTTACTAGTT 1219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46357467072
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5