BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G68450.1

Length=739
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926124 jgi|Araly1|926124|scaffold_201685.1                        643    0.0  


> Ahg926124 jgi|Araly1|926124|scaffold_201685.1
Length=520

 Score =  643 bits (348),  Expect = 0.0
 Identities = 455/504 (90%), Gaps = 18/504 (4%)
 Strand=Plus/Plus

Query  40   CTCTTGATATATTCACCTACCATGATTCCAACAAGATGCAATGAGATCAACGGCTCACGT  99
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    CTCTTGATATATTTACCTACCATGATTCCAACAAGATGCAATGAGATCAACGGCTCACGT  60

Query  100  CCTTCGTCGCTAAAACTCGCCGGAGAATCCCACACCATCAAGAAAACGTCGTCTTGCAAG  159
            ||| |||||||||||||||||||||||||||||||||||||||||||| |||| || |||
Sbjct  61   CCTCCGTCGCTAAAACTCGCCGGAGAATCCCACACCATCAAGAAAACGACGTCGTGTAAG  120

Query  160  TCGAAGCCACGACCACATGGACGGGCATCTCCGGTTATCATCTACGCGCATTCTCCAAAA  219
            |||| |||||| |||||| | ||||| ||||| || ||||| |||||||||||||| |||
Sbjct  121  TCGAGGCCACGGCCACATAGCCGGGCCTCTCCAGTAATCATTTACGCGCATTCTCCGAAA  180

Query  220  GTGATCCACACGCGTGCCGAAGACTTCATGGCCCTGGTTCAAAGGCTGACGGGTCTAGAC  279
            ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| 
Sbjct  181  GTGATCCACACGCGTGCCGAAGACTTCATGGCCTTGGTTCAAAGGCTCACGGGTCTAGAT  240

Query  280  GAGATTATTAGACGGAACACTA--G---T--G--AATCTTCCTCTTCTGTTGTGACGGAA  330
            |||||||||||||||||| |||  |   |  |  |||| ||||||||||| |||||||||
Sbjct  241  GAGATTATTAGACGGAACCCTAACGACGTCAGCGAATCGTCCTCTTCTGTGGTGACGGAA  300

Query  331  GAGGT---------TAACGTCGGGGATGATAACACGGCGGCTCCGTTTAGTCAGGATAGA  381
            ||||          ||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct  301  GAGGGCCAAGAGGCTAACGTCGGTGATGACAACACGGCGGCTCCGTTTAGTCAGGAGAGA  360

Query  382  ACACAACGACAGAAGTTAACTGATATGCCGTTGTTCACACCGAGCTCGATGACCTTGTTT  441
            ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct  361  ACACAACGACAAAAGTTAACTGATATGCCATTGTTCACACCGAGCTCGATGACGTTGTTT  420

Query  442  GGTTCTCCAACTCAACTTATGTATATGTCACCGAACCGGACCGATTCATTTCGACCCTTG  501
            |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  421  GGTTCTCCAAATCAACTTATGTACATGTCACCGAACCGGACCGATTCATTTCGACCCTTG  480

Query  502  GTTTTTAAGTCCGAATAAGACTTC  525
            |||||||||| |||||||| ||||
Sbjct  481  GTTTTTAAGTTCGAATAAGTCTTC  504



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27219762738


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5