BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68460.1
Length=1573
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475966 jgi|Araly1|475966|fgenesh2_kg.2__1096__AT1G68460.1 1892 0.0
> Ahg475966 jgi|Araly1|475966|fgenesh2_kg.2__1096__AT1G68460.1
Length=1467
Score = 1892 bits (1024), Expect = 0.0
Identities = 1228/1320 (93%), Gaps = 40/1320 (3%)
Strand=Plus/Plus
Query 1 ACCACCTCCATTGAAGT---GAAGCTTGAGAAAGACAAAAAGAGAGATTGTA---TAGTG 54
||||||||||||||||| ||||||||||| ||||||||||||||||| || |||||
Sbjct 1 ACCACCTCCATTGAAGTGAAGAAGCTTGAGAGAGACAAAAAGAGAGATTATATTGTAGTG 60
Query 55 TGGTGCATCGTTTC-AAAACACAACAACAAAAAGAACCGTACGAAACTTTTGTCTCTTTC 113
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 TGGTGCATCGTTTCAAAAACAC-ACAACAAAAAGAACCGTACGAAACTTTTGTCTCTTTC 119
Query 114 CGTGTTGTTGTTGTTAGCTAATGACAGAACTCAACTTCCACCTCCTCCCAATAATCTCCG 173
| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 120 C--G-TGTTGTTGTTAGCTAATGACAGAACTCAACTTCCTCCTCCTCCCAATAATCTCCG 176
Query 174 ATCGCTTCACGACGACGACGACAACATCACCGTCGTTCTCGTCACAttcttcttcttctt 233
|||||||||| | |||||||| || |||||||| || || | || || | |||||
Sbjct 177 ATCGCTTCAC--C-ACGACGACGACGTCACCGTC-TT-TC-T--CA-TC-AC--ATTCTT 224
Query 234 cttctcttctctctttcACCAAACGAAGACGAAAACACCAACCTTTAGTATCATCCATAC 293
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 225 CTTCTCTTCTCTCTTTCACCAAACGGAGACGAAAACACCAACCTTTAGTATCCTCCATAC 284
Query 294 GCATGGAACAGTCACGGTCACGGAATCGGAAAGACAAAGTCGTCGTCATTTTAGGAGCAA 353
||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 285 GCATGGAACAGTCACAGTCACAAAATCGAAAAGACAAAGTCGTCGTCATTTTAGGAGCCA 344
Query 354 CCGGCGCCGGAAAATCAAGACTTTCCGTCGATCTCGCTACTCGTTTCCCTTCAGAGATCA 413
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 345 CCGGCGCCGGAAAATCAAGACTTTCCGTCGATCTCGCCACTCGTTTTCCTTCAGAGATCA 404
Query 414 TAAACTCCGATAAAATCCAAGTCTACGAAGGATTAGAGATCACAACGAATCAGATTACGT 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 TAAACTCCGATAAAATCCAAGTCTACGAAGGATTAGAGATCACAACGAATCAGATTACGT 464
Query 474 TACAAGACCGTCGCGGCGTTCCTCACCATCTCCTCGGCGTCATCAACCCCGAACACGGCG 533
||| |||||||||||||||||||||||||||||||||||| | |||||||||||||| |
Sbjct 465 TACCAGACCGTCGCGGCGTTCCTCACCATCTCCTCGGCGTTTTAAACCCCGAACACGGTG 524
Query 534 AACTAACCGCCGGAGAGTTTCGCTCCGCCGCTTCAAACGTCGTCAAAGAGATAACTTCTC 593
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 525 AACTCACCGCCGGAGAGTTTCGCTCCGCCGCTTCAAATGTCGTCAAAGAGATAACCACTC 584
Query 594 GTCAAAAGGTTCCGATTATCGCCGGTGGATCTAACTCTTTCGTCCACGCACTCTTAGCTC 653
|||||||| ||||||| |||||||||||||||||||||||||| |||||| |||||||||
Sbjct 585 GTCAAAAGCTTCCGATAATCGCCGGTGGATCTAACTCTTTCGTTCACGCAGTCTTAGCTC 644
Query 654 AACGATTCGACCCAAAGTTCGATCCTTTTTCATCCGGGTCGTGTTTAATCAGCTCCGATT 713
||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 645 AACGATTCGACCCAAAGATCGATCCTTTTTCTTCCGGGTCGGGTTTAATCAGCTCCGATT 704
Query 714 TGCGTTACGAGTGTTGTTTCATCTGGGTCGATGTATCGGAGACTGTTCTCTACGAGTATC 773
|||||||| ||||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 705 TGCGTTACAAGTGTTGTTTCATCTGGGTCGATGTATCGGAGACTGTACTTTACGATTATC 764
Query 774 TTCTCAGAAGAGTCGACGAAATGATGGATTCAGGTATGTTCGAAGAGCTGTCTAGATTCT 833
|||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 765 TTCTCAAAAGAGTCGACGAAATGATGGATTCAGGTATGTTCGAAGAGCTATCTGGATTCT 824
Query 834 ACGACCCGGTTAAATCCGGTTTAGAAACCC-GGTTTGGGATTAGGAAAGCTATAGGTGTA 892
||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||
Sbjct 825 ACGACCCGGTTAAATCCGGTTTA-AAACCCCGGTTTGGGATTCGGAAAGCTATAGGTGTA 883
Query 893 CCGGAGTTTGACGGTTACTTCAAAGAGTATCCACCGGAGAAGAAGATGATAAAGTGGGAC 952
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 884 CCGGAGTTTGACGGTTACTTCAAAGAGTATCCACCGGAGAAGA---TGATAAAGTGGGAC 940
Query 953 G---CTTTAAGAAAAGCGGCGTACGATAAGGCGGTTGATGATATCAAAAGGAACACGTGG 1009
| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 941 GATGCTTTAAGAAAAGCGGCGTACGATAAGGCGGTGGAGGATATCAAAAGGAACACGTGG 1000
Query 1010 ACGTTAGCGAAGAGACA-AGTGAAGAAGATTGAGATGCTAAAAGACGCTGGTTGGGAAAT 1068
||||||||||||||||| | | |||||||| |||||||||||||||||||||||||||||
Sbjct 1001 ACGTTAGCGAAGAGACAGA-TAAAGAAGATAGAGATGCTAAAAGACGCTGGTTGGGAAAT 1059
Query 1069 AGAAAGAGTTGATGCAACGGCGTCGTTTAAAGCAGTGATGATGAAGAGTTCGTCGGAGAA 1128
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1060 AGAAAGAGTTGATGCAACGGCGTCGTTTAAAGCGGTGATGATGAAGAATTCGTCGGAGAA 1119
Query 1129 GAAGTGGAGAGAGAATTGGGAAGAGCAAGTGTTGGAGCCAAGCGTAAAGATTGTGAAGCG 1188
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1120 GAAGTGGAGAGAGATTTGGGAAGAGCAAGTGTTGGAGCCAAGCGTAAAGATTGTGAACCG 1179
Query 1189 GCATTTGGTGCAAAATTAG-tttttttttttgttttttccagctattttacagctcattt 1247
|||||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1180 GCATTTGGTGGAAGATTAGGTTTTTTTTTTTGTTTTT-CCAGCTATTTTACAGCTCATTT 1238
Query 1248 ttgggaactatttttGAAATAATAA--TTGGAA-AAAAGA--GACAtttttttgttgttg 1302
||||||||||||||||||||||||| |||||| |||| | |||||||||||| |||||
Sbjct 1239 TTGGGAACTATTTTTGAAATAATAAAATTGGAAGAAAAAAAAGACATTTTTTTGCTGTTG 1298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58925609015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5