BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68470.1
Length=1539
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339091 jgi|Araly1|339091|fgenesh1_pg.C_scaffold_2001190 2050 0.0
> Ahg339091 jgi|Araly1|339091|fgenesh1_pg.C_scaffold_2001190
Length=1374
Score = 2050 bits (1110), Expect = 0.0
Identities = 1293/1380 (94%), Gaps = 18/1380 (1%)
Strand=Plus/Plus
Query 22 ATGACTTTCAATAAGAGGCAAGTCAAGATCAATCACTGGCCGGAGAAGAACGACAAAGAG 81
|||| || || ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGAGTTACACTAAGAGGCAAGTCAAGATCAATCACTGGCCGGAGAAGAAAGACAAAGAG 60
Query 82 AAGCAGAAATACTCC-AAAAACAGAGAAACCG-TCAAGTTGACACTTCTCACTCTTCTTC 139
||| |||||||| || ||||||||||||| || | || |||| | |||||||||| ||||
Sbjct 61 AAGGAGAAATAC-CCAAAAAACAGAGAAA-CGCTAAAATTGATAATTCTCACTCTGCTTC 118
Query 140 TC-CTTTGCTCAATTTGTTTCCTCTTCCTAACTCTCAATTTCCCCTTCACAATAGAATTC 198
|| | || ||||||||||||||||||||||| |||| ||||||||||||||| |||||||
Sbjct 119 TCTCCTT-CTCAATTTGTTTCCTCTTCCTAATTCTCCATTTCCCCTTCACAACAGAATTC 177
Query 199 ACAGCCTCAATCCCTCGCACATGCGACCACAATTTCACCGTCTACGTGTACGATCTCCCC 258
|||||||||||||| |||| |||| |||||||||||||||||||||| |||||||| |||
Sbjct 178 ACAGCCTCAATCCCCCGCAAATGCTACCACAATTTCACCGTCTACGTCTACGATCTTCCC 237
Query 259 AAAGAGTTCAACATCGGTCTCCTCCAAAATTGCCGACACTTAAACATCTACACCAACATG 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AAAGAGTTCAACATCGGTCTCCTCCAAAATTGCCGACACTTAAACATCTACACCAACATG 297
Query 319 TGCCCTCACGTGGCCAACAATGGCCTTGGACAGCCTCTTCA-C-C-GCGGACGAACTTCG 375
|| |||||||| |||||||||||||| || ||||||||| | | | |||||||||| |||
Sbjct 298 TGTCCTCACGTAGCCAACAATGGCCTCGGTCAGCCTCTTTACCGCAGCGGACGAACGTCG 357
Query 376 TGGTTCTCTACGCACCAGTTCATAGCCGAGATGATCTTCCACGCACGTGTCGAA-AACCA 434
|||||| |||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 358 TGGTTCGCTACACACCAGTTCATAGCCGAGATGATCTTCCACGCACGTGT-AAAGAACCA 416
Query 435 TCCATGCCGCACGTATGAGCCAGACACTGCCGACATCTTCTACGTCCCTTTCTACGGTGG 494
|| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 417 CCCGTGCCGCACGTATGAGCCAAACAATGCCGACATCTTCTACGTCCCTTTCTACGGTGG 476
Query 495 TCTCTACGCTTCAAGCGTGTTCCGAGAGCAAAACCTGACCAAGCGCGACGAGCTAGCTGT 554
||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| ||
Sbjct 477 CCTCTACGCTTCAAGCGTCTTCCGAGAGCAAAACTTAACCAAGCGCGACGAGCTAGCCGT 536
Query 555 CAGATTAGTCAACTACATTAGTGGCCAACGATGGTGGAAGAGAAGCAACGGTCGTGATCA 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CAGATTAGTCAACTACATTAGTGGCCAACGATGGTGGAAGAGAAGCAACGGTCGTGATCA 596
Query 615 TTTCTTGGCCATAGGGAGGACAGCTTGGGATTTCATGCGCTCCTCCGACACTGA---CTT 671
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 597 TTTCTTGGCCATAGGGAGGACAGCTTGGGATTTCATGCGCTCCTCCGACACTGATGACTT 656
Query 672 TGGAGCTAACATGCTCATGCAAATGCCACGTGTCATGAACATGTCGGTGCTGACCGTGGA 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 657 TGGAGCTAACATGCTCATGCAAATGCCACGTGTCATGAACATGTCGGTGCTGACCGTAGA 716
Query 732 GAGGCAGCCTTGGAATGGTGACAATCACTTTGGTATACCGTATCCTTCTTATTTTCATCC 791
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GAGGCAACCTTGGAAAGGTGACAATCACTTTGGTATACCGTATCCTTCTTATTTTCATCC 776
Query 792 GTACACGTCAGCAGAAATGGTGACGTGGCAGGACAAGATGAAAA-ATGTCGAGAGACCAA 850
|||||||||||||||||||||||||||||| |||||||||| || | |||||||||||||
Sbjct 777 GTACACGTCAGCAGAAATGGTGACGTGGCAAGACAAGATGAGAAGA-GTCGAGAGACCAA 835
Query 851 ACTTGTTTAGTTTTGTCGGTGGGCCGAGAAAGGGCTTGGAGAAAGCTGCCATTAGAGACG 910
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 836 ACTTGTTTAGTTTTGTCGGTGGGCCGAGAAAGGGCTTGGAGAAAGCAGCCATTAGAGACA 895
Query 911 AGCTGATCAAGCAATGCGCTGAGTCGAGCCATTGTGAGCTTCTCAAGTGTGAAAATGGAG 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 AGCTGATCAAGCAATGCGCTGAGTCGAGCCATTGTGAGCTTCTCAAGTGTGAAAATGGAG 955
Query 971 GGTCCAGGTGTCACAACCCAATGACGGTATTAGGAGTGATGGCTAGGTCACGGTTTTGCC 1030
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GGTCCAGGTGTCACGACCCGATGACGGTATTAGGAGTGATGGCTAGGTCACGGTTTTGCC 1015
Query 1031 TACAAGCACCGGGGGACTCATTCACGCGGAGATCAACATTCGATGCGATGTTAGCCGGGT 1090
|||||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |
Sbjct 1016 TACAAGCACCGGGGGACTCATTTACGCGCAGGTCAACATTCGATGCGATGTTAGCCGGCT 1075
Query 1091 GCATACCGGTCtttttttCACCCCACACTATGTATACACAGTACATGTGGTATCTTCCGG 1150
|||||||||||||||||||||| || || ||||||||||||||| |||||||||||||||
Sbjct 1076 GCATACCGGTCTTTTTTTCACCACATACCATGTATACACAGTACTTGTGGTATCTTCCGG 1135
Query 1151 ACGATAAAAGAAGTTACTCAGTGTTCATGGACGAAAAGAACAACACTCATATAGAACAAG 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 GTGATAAAAGAAGTTACTCAGTGTTCATGGACGAAAAGAACAACACTCATATAGAACAAG 1195
Query 1211 AGCTCTTGAGGATCTCGGAGAACGAAGTGGTTCAAATGAGAGAAATAGTCATCGATTTGA 1270
|||||||||||||||| |||| |||||||||||||||||| |||| |||||| |||||||
Sbjct 1196 AGCTCTTGAGGATCTCAGAGAGCGAAGTGGTTCAAATGAGGGAAACAGTCATTGATTTGA 1255
Query 1271 TCCCGAGAC-TGACTTATGCGCACCCAAACTCTACTAACTATGATTTACCAGATGCGGTT 1329
|||| || | | |||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1256 TCCCAAG-CGTAACTTATGCGCACCCAAACGCCACTAACTATGATTTACCAGATGCGGTT 1314
Query 1330 GATATAGCGTTAGAGGCACTAGCTAAGCAAGCAAGAGACAATGTTGTGGTTTCATTGTAA 1389
||| |||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1315 GATGTAGCATTAGAGGCACTAGCTAAGGAAGCAAGAGACAAGGTTGTGGTTTCATTGTAA 1374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57630540685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5