BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68480.1
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475967 jgi|Araly1|475967|fgenesh2_kg.2__1097__AT1G68480.1 1932 0.0
> Ahg475967 jgi|Araly1|475967|fgenesh2_kg.2__1097__AT1G68480.1
Length=1187
Score = 1932 bits (1046), Expect = 0.0
Identities = 1145/1192 (96%), Gaps = 9/1192 (1%)
Strand=Plus/Plus
Query 1 TTAGTTTCCACACGCagagagagaaacaaagagagagaTGGGAGGGAGGGTTTGTGGCAG 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 TTAGTTTCCACACGCAGAGAGAGAAACAAAGAGAGAGAAGGGAGGGAGGGTTTGTGGCAG 60
Query 61 ATAAACTGATAGAAAACTTTCGAACCTCTCTTCTTTAACTTTTACTACTCTCTATTCG-T 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 ATAAACTGATAGAAAACTTTCGAACCTCTCTTCTTTAACTTTTACTACTCTCTATTCGTT 120
Query 120 TTTTCTCTTCCTTTTGTGGTGCCGCCTCCAACTGAAAGTCTTCTAATATATATTCTCAAT 179
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 TTTTCTCTTCCTTTTGTGGTGCCGCCTCCAACTGAAAGTCTTCTAATATTTATTCTCAAT 180
Query 180 TATTCTAGCTCTCCGGGAGAAGTCTTATCTCACGCCAATCTCTCATTTCCCACTATGAGG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TATTCTAGCTCTCCGGGAGAAGTCTTATCTCACGCCAATCTCTCATTTCCCACTATGAGG 240
Query 240 CATGAGGAGAATTACTTAGACCTCAACAATCTTCCAGATGATTTTTCTAAAGATGGCAAT 299
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 CATGAGGAGAATTACTTAGACCTCAACAATCTTCCGGATGATTTTTCTAAAGATGGCAAT 300
Query 300 AAGCAAGCCCTCGAGGAAGGTTCTTCCTCTGGTCAAAGAAAGAAGAAAGGGAGTAAAGAA 359
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 301 AAGCAAGCCCTCGAGGAAGGTTCTTCCTCTGGTCTAAGAAAGAAGAAAGGAAGTAAAGAA 360
Query 360 GGGAAAGATGAGAGTGGGAAAGTGTACGAATGTCGATTTTGTTCACTCAAGTTCTGCAAA 419
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 361 GGGAAAGATGAGAGTGGGAAGGTGTACGAATGTCGATTTTGTTCACTCAAGTTCTGTAAA 420
Query 420 TCCCAAGCTCTTGGTGGCCACATGAATCGCCACCGACAAGAGAGGGAGACCGAGACATTG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCCCAAGCTCTTGGTGGCCACATGAATCGCCACCGACAAGAGAGGGAGACCGAGACATTG 480
Query 480 AATCAAGCTCGTCAATTGGTCTACCGTAACGATACCATAACCCCACCTGGAATTTCTCCT 539
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 481 AATCAAGCTCGTCAATTGGTCTACCGTAACGATACCTTAACCCCACCTGGAATTTCTCCT 540
Query 540 TTCGGCTATCATCATACCACAGATCCAACAATATACCGGTCGGTTTACTCATCACCAATG 599
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTCGGTTATCATCATACCACGGATCCAACAATATACCGGTCGGTTTACTCATCACCAATG 600
Query 600 ATATATCCTGGAAGCTCTTCAACGAACTTGGTTCCGCAACCGCCGATGCCACCACCACCG 659
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 601 CTATACCCTGGAAGCTCTTCAACAAACTTGGTTCCGCAACCGCCGATGCCACCACCGCCG 660
Query 660 CCTCCATATCCATACTCTTCAAACCAATACTCTCCTCACAACCACTTCAACGACTACTAC 719
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CCGCCATATCCATACTCTTCAAACCAATACTCTCCTCACAACCACTTCAACGACTACTAC 720
Query 720 TTAAACCCATCTTTTAGAGGCAGCAGAAGCATCTCTCCAAGTCCTAACCTCCCCACCACC 779
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 721 TTAAACCCATCTTTTAGAGGCAGCAGAAGCATCTCTCCAAACCCTAACCTCCCCACCACC 780
Query 780 ACCACCGTTGATTACATGGCCGATAGTCCCGTGGAACCGGGCTACACTTGTGTTGGTGCA 839
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 781 ACAACCGTTGATTACATGGCCGATAGTCCCGTGGAACCGAGCTACACTTGTGTTGGTGCA 840
Query 840 CCCATTGGTCCGACCGGTTTCCCTATCCGTGGCCCAAGCATCGTCCGTGCGCCGCTTGAA 899
||||||||||||| ||||||||||||||||||| |||||| |||||||||||| ||||||
Sbjct 841 CCCATTGGTCCGATCGGTTTCCCTATCCGTGGCTCAAGCAGCGTCCGTGCGCCCCTTGAA 900
Query 900 CCACCACAAGGTCGTGATGGTGACGCTTCACGACAGCGTTTGGATCACTCTCTTAGGTTC 959
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 901 CCACCACAAGGTCGTGATGGTGACGCTTCACGGCAGCGTTTGGATCACTCTCTTAGGCTC 960
Query 960 CCCATCAATCGGTTTCAAGATCATCACTCGCTCTGAGTTTTAATAGATTCTCTAC-Gctt 1018
|||||||||||||||||||||||||||||||||||||||||||||||||| || | || |
Sbjct 961 CCCATCAATCGGTTTCAAGATCATCACTCGCTCTGAGTTTTAATAGATTCCCT-CTGCGT 1019
Query 1019 ttcttttcttttctttttttgtttttttttGGGTATTTTCTTGTCCTCTTGTTTTGTAAC 1078
||||||| |||| ||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 1020 TTCTTTTATTTTATTTTT--GTTTTTTT--GGGTATTTTCTTGTTCTCTTGTTTTGTAAT 1075
Query 1079 TTTGTTGGTTCTATCTAAAAGTAGAGATCTAGAATTGTCTAAACGCCAAG-ATCCTACAT 1137
|||||||||||||| |||||| || |||||||||||||||||||| || | |||||||||
Sbjct 1076 TTTGTTGGTTCTATGTAAAAGCAGGGATCTAGAATTGTCTAAACGACATGGATCCTACAT 1135
Query 1138 GTGTTATTATCATAATGACATGTTTGT-TGGTTTTTATTGGTCTAGTCGAAT 1188
||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1136 GTGTTATTATCATAATGACATGTTTGTGTTTTTTTTATTGGTCTAGTCGAAT 1187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45709377483
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5