BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68490.1
Length=1337
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926128 jgi|Araly1|926128|scaffold_201689.1 985 0.0
> Ahg926128 jgi|Araly1|926128|scaffold_201689.1
Length=618
Score = 985 bits (533), Expect = 0.0
Identities = 598/627 (95%), Gaps = 13/627 (2%)
Strand=Plus/Plus
Query 238 TTTAAATTCG-AAG-AAAAGATGAATCACTTTGCGGTTCAACCAAACGCGTTCGCTGCCG 295
||| |||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 TTTGAATTCGAAAGAAAAAGATGAATCACTTTGCGGTTCAACCAAACGCTTTCGCTGCCG 60
Query 296 GCGGAGATTTGAGAAGCAGCTCCGTTTCAGTTGTTGAAAGAGATCAAACCACCGTCGTTT 355
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 GCGGAGATTTGAGAAGCAGCTCCGTTTCTGTTGTTGAAAGAGATCAAACCACCGTCGTTT 120
Query 356 GTCCAAAACCACGTCGTATTGGTCTCCGTAACAACCATCACCATCCTTCTCGATCTCTCC 415
| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 121 GCCCAAAACCACGTCGTATTGGTCTCCGTAACAA-C--CACCATCCTTCTCGATCTCTCC 177
Query 416 GTTGTTACTTCAGTCATCAATTGGAGCTTTGTGAATCCAAAGCAGAGACTGATATCTTAG 475
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 178 GTTGTTACTTCAGTCACCAATTGGAGCTTTGTGAATCCAAAGCAGAGACTGATATTTTGG 237
Query 476 ATATCATACTCACCAAGGATGGTTATGGTGCAGAACAAGTTAATAAGCAGGTAATAGACT 535
||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 238 ATATCATTCTCACCAAGGATGGTTATGGTTCAGAACAAGTTCATAAGCAGGTAATAGACT 297
Query 536 CGCCGTCCCCGTTTTTATGTGGGTCGCCGCCGAGCAGAGTCGCTAACCCATTAACACAGG 595
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 298 CGCCGTCCCCGTTTTTATGTGGGTCGCCGCCGAGTAGAGTCGCTAACCCAATAACACAGG 357
Query 596 ATGCTCGATTTCGAGATGAGATTGTATCGGTTTCTTCAGTGATTCCGCCTCAGTTGGGTT 655
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 358 ATGCTCGATTTCGAGATGAGATTGTATCGGTTTCTTCAGTGATTCCGCCTCCGTTGGGTT 417
Query 656 TACCTCCTTCTTCATCTCCTTCTTCTTCCTCTGGGAGGAAAGGAGGATGTGTTGTTAGAG 715
|||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 418 TACCTCCTTCATCATCTCCTTCTTC--C-TCTGGGAGGAAAGGAGGATGTGTTGTTAGAG 474
Query 716 GCAATTTTGGTAACAGCCCAAAGGTTAGAGTT-GAAGGGTTTGATTGTCTTGACAGGGAT 774
|||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct 475 GCAATTTTGGTAACAGCCCAAAGGTTAG-GATCGAAGGGTTTGATTGTCTTGACAGGGAC 533
Query 775 AGCAGAAACTGCAGCATCCCTGCCTTGGCTTAGAAAC-GAAACCCGAAACGAACCCTTTT 833
||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||
Sbjct 534 AGCAGAAACTGCAGCATCCCTGCCTTGGCTTAGAAACTGAA-CCCGAA-CGAACCCTTTT 591
Query 834 AGGATTTTCATACATACTCTTTTGAGT 860
|||||||||||||||||||||||||||
Sbjct 592 AGGATTTTCATACATACTCTTTTGAGT 618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50017267104
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5