BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G68500.1

Length=509
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg315868 jgi|Araly1|315868|fgenesh1_pm.C_scaffold_2000901           361    3e-99


> Ahg315868 jgi|Araly1|315868|fgenesh1_pm.C_scaffold_2000901
Length=312

 Score =  361 bits (195),  Expect = 3e-99
 Identities = 246/270 (91%), Gaps = 6/270 (2%)
 Strand=Plus/Plus

Query  57   GATATGGAGGAAGAAGGGAC---TGCTGATGATCACTCATTGGCTGCTGCAGCGATGGCG  113
            ||||||||||||||||||||   || ||||||||||||||||||||||||||| ||||||
Sbjct  43   GATATGGAGGAAGAAGGGACTGATGATGATGATCACTCATTGGCTGCTGCAGCCATGGCG  102

Query  114  GTTGCTGTTGCCGCCGCAGCAGCAACAGCAGCGGAAGAGGAGGAGCAATGTTGGGGCGGC  173
            ||||| ||||| || || || |||||||| |||||||||||||||||| |||||||||| 
Sbjct  103  GTTGCGGTTGCTGCAGCGGCGGCAACAGCGGCGGAAGAGGAGGAGCAAAGTTGGGGCGGT  162

Query  174  GGAGTAGTGGAGGAGATAACGTGGAGCTCTGTGTGGTTGCCTTTTTGGGACGTTGAGTTT  233
            ||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||| 
Sbjct  163  GGAGTGGTGGAGGAGATGACGTGGAGCTCTGTGTGGTTGTCTTTTTGGGACGTTGAGTTC  222

Query  234  GTAGGAAGAAACTATGGTGTCTTGTTCAATGATGTTGTTTGGGACGATGATATTTGGAAC  293
            || ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct  223  GTGGGAAGAAACTATGGTATCTTGTTCAATGATGTTGTATGGGACGATGATATTTGGAAC  282

Query  294  ATCCACAATTTAACTCAT--T-CCTCATAG  320
            ||||||||| ||||||||  | ||||||||
Sbjct  283  ATCCACAATCTAACTCATCATTCCTCATAG  312


 Score = 75.0 bits (40),  Expect = 5e-13
 Identities = 40/40 (100%), Gaps = 0/40 (0%)
 Strand=Plus/Plus

Query  39  ATGAAGAGACAGAGAAAAGATATGGAGGAAGAAGGGACTG  78
           ||||||||||||||||||||||||||||||||||||||||
Sbjct  1   ATGAAGAGACAGAGAAAAGATATGGAGGAAGAAGGGACTG  40



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18505460665


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5