BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68510.1
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475970 jgi|Araly1|475970|fgenesh2_kg.2__1100__AT1G68510.1 1380 0.0
> Ahg475970 jgi|Araly1|475970|fgenesh2_kg.2__1100__AT1G68510.1
Length=855
Score = 1380 bits (747), Expect = 0.0
Identities = 819/855 (96%), Gaps = 0/855 (0%)
Strand=Plus/Plus
Query 1 CAAAAGTTGAAAAATACCAGCTCATTCACTTATGACTCATGAGTAACTTCTTCCTTATAA 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CAAAAGTTGAAAAAGACCAGCTCATTCACTTATGACTCATGAGTAACTTCTTCCTTATAA 60
Query 61 ATTCAAATTGTTCACAACTTCCTTGAGTTCCATTTCCGAACACAAACACACATCATACGT 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 ATTCAAATTGTTCACAACTCCCTTGAGTTCCATTTCCGAACACAAACACACATAATACGT 120
Query 121 ATATTTGTCACTAATAAACATATAAAGGAATATGAGAATCAGCTGCAACGGGTGTAGGGT 180
|||| |||||||| |||||||||||||| ||||||||||||||||||| || ||||| ||
Sbjct 121 ATATATGTCACTACTAAACATATAAAGGGATATGAGAATCAGCTGCAATGGATGTAGAGT 180
Query 181 TCTACGCAAAGGTTGCAACCAAGATTGCACCATTCGACCATGCCTTCAATGGATCAAATC 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 GCTACGCAAAGGTTGCAACCAAGATTGCACCATAAGACCATGCCTTCAATGGATCAAATC 240
Query 241 CGCAGACTCTCAAGCCAATGCTACACTCTTCCTTGCTAAGTTCTACGGTCGAGCCGGTCT 300
||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||
Sbjct 241 CGCAGACTCTCAAGCCAATGCCACACTCTTCCTCGCCAAGTTCTATGGTCGAGCCGGTCT 300
Query 301 TCTTAACCTCATCGAATCCGGTCCTGATCACCTTCGTCCCGCAATATTTAGGTCACTTCT 360
||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 301 TCTCAACCTCATCGAATCCGGTCCTGACCACCTTCGCCCCGCAATATTTAGGTCACTTCT 360
Query 361 GTACGAGGCTTGTGGTCGGATCGTGAACCCTGTAGATGGTTCGGTTGGTTTGATGTGGTC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTACGAGGCTTGTGGTCGGATCGTGAACCCTGTAGATGGTTCGGTTGGTTTGATGTGGTC 420
Query 421 AGGGAACTGGGCTCAGTGCCAAGCAGCTGTTGACGCCGTGCTCAACGGCTTACCCATAAC 480
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGGGAACTGGTCTCAGTGCCAAGCAGCTGTTGACGCCGTGCTCAACGGCTTACCCATAAC 480
Query 481 TCACACACCTCTTCCAAGTGCATCCGCGTCGCACCAGATCATTCCTCCCCACAGGACTTA 540
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 481 TCACACATCTCTTCCAAGTGCATCCGCGTCGCACCAGATCATTCCTCCTCACAGGACTTA 540
Query 541 CGATATACGCCACGTGGCTAAAGATCCAACAACCGGCGGCGACAGTTCGGAGAATCTGGC 600
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 541 CGATATACGCCACGTGGCTAAAGATCCAACAACCGGCGGCGACAGTTCTGAGAATCTAGC 600
Query 601 CACACGTGTAAACGCTAACAAGAGCAAGACGCAAACTGGCCGATTCAAACGTGAATCCGT 660
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 601 CACACGTGTAAACGCTAACAAGAGCAAGACACAAACTGGCCGATTCAAACGTGAATCTGT 660
Query 661 GAACCAACTAGGTGAATGTAGTCATGACATGTGGCAACTCCCAAGTTCTAGTGCTACGCA 720
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 661 GAACCAACAAGGTGAATGTAGTCATGACATGTGGCAACTCCAAAGTTCTAGTGCTGCGCA 720
Query 721 TGGTTATGGCCACTTCACGTTGGAGAATGTGGAGAGCCGAAGGGAAGCTCCATTTAATCA 780
||| ||||| |||||||||||||||| ||| |||||| |||||||||||||||| |||||
Sbjct 721 TGGCTATGGTCACTTCACGTTGGAGACTGTAGAGAGCGGAAGGGAAGCTCCATTAAATCA 780
Query 781 AAGTTCTCCAAATCTTGGGTTTGATGATCAAGTCGATATCAACGAGGTTGGCTTAGAGCT 840
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AAGTTCTTCAAATCTTGGGTTTGATGATCAAGTCGATATCAACGAGGTTGGCTTAGAGCT 840
Query 841 CAGACTTGGTTAGAA 855
|||||||||||||||
Sbjct 841 CAGACTTGGTTAGAA 855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41134627443
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5