BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68530.1
Length=1861
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926134 jgi|Araly1|926134|scaffold_201695.1 2913 0.0
Ahg472173 jgi|Araly1|472173|fgenesh2_kg.1__2127__AT1G19440.1 126 5e-28
> Ahg926134 jgi|Araly1|926134|scaffold_201695.1
Length=1797
Score = 2913 bits (1577), Expect = 0.0
Identities = 1736/1811 (96%), Gaps = 17/1811 (1%)
Strand=Plus/Plus
Query 7 TCATCTTCAAAAATACCCTAATCACATTTTGTAACAATAATACAATTATACATTAAAACT 66
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1 TCATCTTCAAAAATACCCTAATCACATTTTGTAACAATAATAGAATTACACATTAAAACT 60
Query 67 CTCCGACGATGCCTCAGGCACCGATGCCAGAGTTCTCTAGCTCGGTGAAGCTCAAGTACG 126
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCCGAAGATGCCTCAGGCACCGATGCCAGAGTTCTCTAGCTCGGTGAAGCTCAAGTACG 120
Query 127 TGAAACTTGGTTACCAATATTTGGTTAACCATTTCTTGAGTTTTCTTTTGATCCCGATCA 186
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 TGAAACTTGGTTACCAATATTTGGTTAATCATTTCTTGAGTTTTCTTTTGATCCCGATCA 180
Query 187 TGGCTATTGTCGCCGTTGAGCTTCTTCGGATGGGTCCTGAAGAGATCCTTAATGTTTGGA 246
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 TGGCTATCGTCGCCGTTGAGCTTCTTCGGATGGGTCCTGGAGAGATCCTTAATGTTTGGA 240
Query 247 ATTCACTCCAGTTTGACCTAGTTCAGGTTCTATGTTCTTCCTTCTTTGTCATCTTCATCT 306
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACTCACTTCAGTTTGACCTAGTTCAGGTTCTATGTTCTTCCTTCTTTGTCATCTTCATCT 300
Query 307 CCACTGTTTACTTCATGTCCAAGCCACGCACCATCTACCTCGTTGACTATTCTTGTTACA 366
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 301 CCACCGTTTACTTCATGTCCAAGCCACGTACCATCTACCTCGTTGACTATTCTTGTTACA 360
Query 367 AGCCACCTGTCACGTGTCGTGTCCCCTTCGCAACTTTCATGGAACACTCTCGTTTGATCC 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 AGCCACCTGTCACGTGTCGTGTCCCCTTCGCAACTTTCATGGAACACTCTCGTTTGAACC 420
Query 427 TCAAGGACAAGCCTAAGAGCGTCGAGTTCCAAATGAGAATCCTTGAACGTTCTGGCCTCG 486
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 421 TCAAGGACAACCCTAAGAGCGTTGAGTTCCAAATGAGAATCCTTGAACGTTCTGGCCTCG 480
Query 487 GTGAGGAGACTTGTCTCCCTCCGGCTATTCATTATATTCCTCCCACACCAACCATGGACG 546
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 481 GTGAAGAGACTTGTCTCCCTCCGGCTATTCATTATATTCCTCCGACACCAACCATGGACG 540
Query 547 CGGCTAGAAGCGAGGCTCAGATGGTTATCTTCGA-GGCCATGGACGATCTTTTCAAGAAA 605
|||||||||| ||||||||||||||||||||| | ||||||||||||||| |||||||||
Sbjct 541 CGGCTAGAAGTGAGGCTCAGATGGTTATCTTC-ACGGCCATGGACGATCTATTCAAGAAA 599
Query 606 ACCGGTCTTAAACCTAAAGACGTCGACATCCTTATCGTCAACTGCTCTCTTTTCTCTCCC 665
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 600 ACCGGTCTTAAACCTAAAGACGTCGACATCCTTATCGTCAATTGCTCTCTTTTCTCTCCC 659
Query 666 ACACCATCGCTCTCAGCTATGGTCATCAACAAATATAAGCTTAGGAGTAATATCAAGAGC 725
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 660 ACACCATCACTCTCAGCTATGGTCATCAACAAATATAAGCTTAGGAGTAATATCAAAAGC 719
Query 726 TTCAATCTTTCGGGGATGGGCTGCAGCGCGGGCCTGATCTCAGTTGATCTAGCCCGCGAC 785
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 720 TTCAATCTCTCGGGGATGGGCTGCAGCGCGGGCCTCATCTCAGTTGATCTAGCCCGCGAC 779
Query 786 TTGCTCCAAGTTCATCCCAATTCAAATGCAATCATCGTCAGCACGGAGATCATAACGCCT 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTGCTCCAAGTTCATCCCAATTCAAATGCAATCATCGTCAGCACGGAGATCATAACGCCT 839
Query 846 AATTACTATCAAGGCAACGAGAGAGCCATGTTGTTACCCAATTGTCTCTTCCGCATGGGT 905
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 840 AATTACTATCAAGGAAACGAGAGAGCCATGTTGTTACCCAATTGCCTCTTCCGCATGGGC 899
Query 906 GCGGCAGCCATACACATGTCAAACCGCCGGTCTGACCGGTGGCGAGCCAAATACAAGCTT 965
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 900 GCGGCAGCCATACACATGTCAAACCGCCGCTCTGACCGGTGGCGAGCCAAATACAAGCTT 959
Query 966 TCCCACCTCGTCCGGACACACCGTGGCGCTGACGACAAGTCTTTCTACTGTGTCTACGAA 1025
||||| || |||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 960 TCCCATCTGGTCCGGACCCACCGCGGTGCTGACGACAAGTCTTTCTACTGTGTCTACGAA 1019
Query 1026 CAGGAAGACAAAGAAGGACACGTTGGCATCAACTTGTCCAAAGATCTCATGGCCATCGCC 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1020 CAGGAAGACAAAGAAGGACACGTTGGCATCAACTTGTCCAAAGATCTCATGGCTATCGCC 1079
Query 1086 GGTGAAGCCCTCAAGGCAAACATCACCACAATAGGTCCTTTGGTCCTACCGGCGTCAGAA 1145
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1080 GGTGAAGCCCTCAAGGCAAACATCACCACAATAGGTCCTTTGGTACTACCGGCGTCAGAA 1139
Query 1146 CAACTTCTCTTCCTCACGTCCCTAATCGGACGTAAAATCTTCAACCCGAAATGGAAACCA 1205
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1140 CAACTTCTCTTCCTCACGTCCCTAATCGGGCGTAAAATCTTCAACCCAAAATGGAAACCA 1199
Query 1206 TACATACCGGATTTCAAGCTGGCCTTCGAACACTTTTGCATTCACGCAGGAGGCAGAGCG 1265
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1200 TACATACCGGATTTCAAACTGGCCTTCGAACACTTCTGCATTCACGCAGGAGGCAGAGCG 1259
Query 1266 GTGATCGACGAGCTCCAAAAGAATCTACAACTATCAGGAGAACACGTTGAGGCCTCAAGA 1325
|| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 1260 GTTATCGACGAGCTCCAGAAGAACCTACAGCTATCAGGAGAACACGTTGAGGCCTCGAGA 1319
Query 1326 ATGACACTACATCGTTTTGGTAACACGTCATCTTCATCGTTATGGTACGAGCTTAGCTAC 1385
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1320 ATGACACTACATCGTTTTGGTAACACGTCATCGTCATCGTTGTGGTACGAGCTTAGCTAC 1379
Query 1386 ATCGAGTCTAAAGGGAGAATGAGGAGAGGCGATCGCGTTTGGCAAATCGCGTTTGGGAGT 1445
|||||||||||||||| |||||||||||||||||| |||||||| || |||||||| ||
Sbjct 1380 ATCGAGTCTAAAGGGAAAATGAGGAGAGGCGATCGTGTTTGGCAGATTGCGTTTGGAAGC 1439
Query 1446 GGTTTCAAGTGTAACTCTGCCGTGTGGAAATGTAACCGTACGATTAAGACACCTAAGGAC 1505
||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1440 GGTTTTAAGTGTAACTCAGCCGTGTGGATGTGTAACCGTACGATTAAGACACCTAAGGAC 1499
Query 1506 GGACCATGGTCCGATTGTATCGACCGTTACCCTGTCTTTATTCCCGAAGTTGTCAAACTC 1565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 GGACCATGGTCCGATTGTATCGACCGTTACCCTGTCTTTATTCCCGAAGTTGTCAAACTC 1559
Query 1566 TAAACTGAAAACGTCTTTGAACGGTTTAGTAACGGTTTGATTTTGTGTTACGGTTTAGGT 1625
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1560 TAAACTGAAAACGTCTTTGAACGGTTTAGTAATGGTTTGATTTTGTGTTACGGTTTAGGT 1619
Query 1626 TTATTTGGTCTCGGGATTTGGTTTAAAG-GGG-ATTGAGAAATGGGAAGTTAGAGAGAAG 1683
||||||||||||||||||||||| |||| ||| |||||||||||| ||||||||| ||||
Sbjct 1620 TTATTTGGTCTCGGGATTTGGTTGAAAGAGGGGATTGAGAAATGG-AAGTTAGAGCGAAG 1678
Query 1684 AAAAAGCAAAGCATAAATGTTTGTATTTAATTGCTCTGCATATACTTAAATCTCTGCTTT 1743
|| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1679 ------CA-----TAAATGTTTGTATTTAATTGCTCTGCATATACTTAAATCTCTGTTTT 1727
Query 1744 TCATTTGGGGTATTTTTTAGTTTCTCGTGCTGTAATTAATAACTTGTGGTGTACTCAAAT 1803
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1728 TCATTTGGGGTATTTTTTAGTTTCTCGTGCTGTAATTAATAACTTGTGGTGTA-TCAAAT 1786
Query 1804 AAGAATATTTC 1814
|||||||||||
Sbjct 1787 AAGAATATTTC 1797
> Ahg472173 jgi|Araly1|472173|fgenesh2_kg.1__2127__AT1G19440.1
Length=1860
Score = 126 bits (68), Expect = 5e-28
Identities = 204/268 (76%), Gaps = 16/268 (6%)
Strand=Plus/Plus
Query 1200 AAACCATACATACCGGATTTCAAGCTGGCCTTCGAACACTTT-TGCATTCACGCAGGAGG 1258
||||| || || ||||||||||| || || ||||| || ||| || || || || || ||
Sbjct 1305 AAACCGTATATCCCGGATTTCAAACTTGCTTTCGAGCA-TTTCTGTATCCATGCTGGTGG 1363
Query 1259 CAGAGCGGTGATCGACGAGCTCCAAAAGAATCTACAACTATCAGGAGAACACGTTGAGGC 1318
||||| |||||||| ||| | | |||||||| || || ||| || || || |||||
Sbjct 1364 AAGAGCTGTGATCGATGAGTTAGAGAAGAATCTGCAGCTTTCACCAGTTCATGTCGAGGC 1423
Query 1319 CTCAAGAATGACACTACATCGTTTTGGTAACACGTCATCTTC-A--T-CGTTATGGTACG 1374
|| || ||||| || ||||| ||||| |||| ||||||| | | | || ||||| |
Sbjct 1424 TTCGAGGATGACTCTTCATCGATTTGGGAACA---CATCTTCAAGCTCCATT-TGGTATG 1479
Query 1375 AGCTTAGC-TACATCG-AGTCTAAAGGGAGAATGAGGAGAGGCGATCGCGTTTGGCAAAT 1432
| || || ||||| | || | ||||| || ||| | ||||| ||||||||||||||||
Sbjct 1480 A-ATTGGCTTACATTGAAG-CCAAAGGAAGGATGCGAAGAGGTAATCGCGTTTGGCAAAT 1537
Query 1433 CGCGTTTGGGAGTGG-TTTCAAGTGTAA 1459
||||||||||||||| ||| || |||||
Sbjct 1538 CGCGTTTGGGAGTGGATTTAAA-TGTAA 1564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69895599575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5