BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68540.1
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475974 jgi|Araly1|475974|fgenesh2_kg.2__1104__AT1G68540.1 1574 0.0
> Ahg475974 jgi|Araly1|475974|fgenesh2_kg.2__1104__AT1G68540.1
Length=1032
Score = 1574 bits (852), Expect = 0.0
Identities = 976/1036 (94%), Gaps = 8/1036 (1%)
Strand=Plus/Plus
Query 37 AAAGATGTCTGAGTATTTGGTAACTGGAGGAACAGGTTTCATTGCTTCTTACATCATCAA 96
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 AAACATGTCTGAGTATTTGGTAACTGGAGGAACTGGTTTCATTGCTTCTTACATCATCAA 60
Query 97 ATCACTTCTCGAACTCGGACACACCGTTCGAACAACTGTCCGAAACCCACGTGATGAAGA 156
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 61 ATCACTTCTCGAACTCGGACACACCGTTCGAACCACTGTCCGAAACCCTCGTGATGAAGA 120
Query 157 AAAGGTTGGATTTTTATGGGAATTTCAAGGAGCAAAACAGAGGCTAAAGATTCTCCAAGC 216
||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 121 AAAGGTTGGTTTTTTATGGGAATTTCAAGGAGCAAAACAGAGGTTGAAGATTCTCCAAGC 180
Query 217 TGATCTAACGGTAGAAGGAAGTTTTGATGAAGCAGTGAATGGTGTTGATGGAGTATTCCA 276
|||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 181 TGATCTAACGGTTGAAGGAAGTTTTGATGAAGCAGTGAACGGTGTTGATGGAGTTTTCCA 240
Query 277 CACTGCTTCTCCTGTTCTTGTTCCACAGGATCATAACATTCAGGAGACTTTGGTTGATCC 336
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 241 CACAGCTTCTCCTGTTCTTGTTCCACAGGATCATAACATTCAAGAGACTTTGGTTGATCC 300
Query 337 TATTATAAAGGGTACAACAAATGTGATGAGCTCTTGTGCCAAGTCTAAAGCCACA-T-TG 394
|||||||| || ||||| |||||||||||||||||||| ||||| ||| || | | |
Sbjct 301 AATTATAAAAGGAACAACCAATGTGATGAGCTCTTGTGCTAAGTCCAAA-ACA-AGTCTC 358
Query 395 AAAAGGATTGTTCTTACGTCTTCTTGCTCTTCGATACGCTACCGTTTCGATGCAACTGAA 454
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||
Sbjct 359 AAAAGGATTGTTCTTACGTCTTCTTGTTCTTCGATACGGTACCGTTTCGATGCCACGGAA 418
Query 455 GCTTCTCCTCTCAATGAGTCTCATTGGAGTGATCCTGAATATTGCAAACGTTTCAATCTT 514
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 419 GCTTCTCCTCTCAATGAGTCTCATTGGAGTGATCCTGAATACTGCAAACGTTTCAATCTT 478
Query 515 TGGTATGGATATGCAAAGACTTTA-G-GAGAAAGAGAGGCTTGGAGGATAGCTGAAGAGA 572
||||||||||||||||||||| || | |||||||| | || |||||||||||||||||||
Sbjct 479 TGGTATGGATATGCAAAGACTCTAGGTGAGAAAGA-A-GCATGGAGGATAGCTGAAGAGA 536
Query 573 AAGGATTAGACTTGGTTGTTGTGAATCCTTCGTTTGTGGTTGGTCCATTGCTTGGACCAA 632
|||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 537 AAGGATTAGATTTGGTGGTTGTGAATCCTTCATTTGTGGTTGGTCCATTGCTTGGACCAA 596
Query 633 AACCAACAAGTACTCTGCTTATGATTCTTGCTATTGCTAAAGGTCTTGCTGGAGAGTATC 692
|||||||||||||||| ||||||||||| || ||||| |||||||| |||||||||||||
Sbjct 597 AACCAACAAGTACTCTACTTATGATTCTCGCCATTGCCAAAGGTCTCGCTGGAGAGTATC 656
Query 693 CAAATTTCACTGTCGGGTTTGTGCATATAGATGATGTTGTTGCTGCACATGTATTGGCTA 752
| ||||| || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CGAATTTTACGGTAGGGTTTGTGCATATAGATGATGTTGTTGCTGCACATGTATTGGCTA 716
Query 753 TGGAAGAGCCTAAAGCATCAGGGAGAATCATATGTTCGAGTTCTGTTGCTCATTGGTCTG 812
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 717 TGGAAGAGCCTAAAGCATCAGGGAGAATCATATGTTCGAGTTCGGTTGCTCATTGGTCTG 776
Query 813 AGATCATTGAGTTGATGAGAAATAAGTATCCTAATTACCCATTTGAGAACAAGTGTAGTA 872
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 777 AGATCATTGAGTTGATGAGAAACAAGTATCCTAATTACCCATTTGAGAACAAGTGTAGTA 836
Query 873 ACAAAGAAGGAGACAATAGTCCACATAGTATGGATACAAGGAAGATACATGAGTTGGGAT 932
|||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 837 ACAAAGAAGGGGACAATAGTCCACATAGCATGGACACAAGGAAGATACATGAGTTGGGAT 896
Query 933 TTGGATCCTTCAAGTCACTACCTGAGATGTTTGATGATTGCATCATCAGTTTTCAGAAGA 992
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 897 TTGGTTCCTTCAAGTCACTACCTGAGATGTTTGATGACTGCATCATCAGTTTTCAGAAGA 956
Query 993 AGGGTCTGCTCTAAATATATACATTTTCATACATCGAATTGTCGATTAATGGATCGATTT 1052
||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||| |
Sbjct 957 AGGGTCTGCTCTAAATATACACATTTTCATACATCGTATTGTCGATTTATGGATCGATGT 1016
Query 1053 CAATGTATTGGACTCT 1068
||||| |||| |||||
Sbjct 1017 CAATGGATTGAACTCT 1032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42278314953
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5