BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68552.1
Length=1830
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475977 jgi|Araly1|475977|fgenesh2_kg.2__1107__AT1G68550.2 1513 0.0
> Ahg475977 jgi|Araly1|475977|fgenesh2_kg.2__1107__AT1G68550.2
Length=1761
Score = 1513 bits (819), Expect = 0.0
Identities = 1197/1364 (88%), Gaps = 88/1364 (6%)
Strand=Plus/Plus
Query 501 ATGGTTGCGATTAGAAAGGAACAGTCTTTGAGTGGTGTTAGTAGCGAGATTAAGAAGAGA 560
||||||| | ||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 452 ATGGTTGAGGTTAGAAAAGAACAGTCTTTGAGTGGTACTAGTAGCGAGATTAAGAAGAGA 511
Query 561 GCTAAGAGAAACAC--TCT-ATCGTCCCTTCCTCAAGAAACCCAACCTTTGAGGAAAGTC 617
|||||||||||||| | | ||||||||||||||||||||||||||||||||| ||||||
Sbjct 512 GCTAAGAGAAACACTGTATCATCGTCCCTTCCTCAAGAAACCCAACCTTTGAGAAAAGTC 571
Query 618 CGTATTATTGTGAATGATCCTTATGCTACTGATGATTCCTCTAGTGATGAGGAAGAGCTT 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 CGTATTATTGTGAATGATCCTTATGCTACTGATGATTCCTCTAGTGATGAGGAAGAGCTT 631
Query 678 AAGGTTCCTAAGCCAAGGAAAATGAAACGTATCGTTCGTGAGATTAACTTTCCTTCTATG 737
|||||| ||||| ||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 632 AAGGTTTCTAAGGTTCGGAGAATGAAACGTATCGTTCGTGAGATTAACTTTCAATCTATG 691
Query 738 GAAGTTTCTGAACAGCCTTCTGAGAGTTCTTCTCAGGACAGTACTAAAACTGATGGCAAG 797
|||||||| || |||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct 692 GAAGTTTCAGAGCAGCCTTCTGAGAGTTCTTCTCAGGACAGTACTAAAACTGTTAGTAAG 751
Query 798 ATAGCTGTGTCAGCTTCTCCTGC-TGTTCC----TAG--G---AAGAAGCCTGTTGGTGT 847
| ||||||||| ||||||||||| || ||| | | | |||||||||||||||||
Sbjct 752 AAAGCTGTGTCTGCTTCTCCTGCTTG-TCCTGGGTTGTTGACTAAGAAGCCTGTTGGTGT 810
Query 848 TAGGCAAAGGAAATGGGGGAAATGGGCTGCTGAGATTAGAGATCCTATTAAGAAAACTAG 907
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 811 TAGGCAAAGGAAATGGGGGAAATGGGCTGCTGAGATTAGACATCCTATTAAGAAAACTAG 870
Query 908 GACTTGGTTGGGTACTTTTGATACTCTTGAAGAAGCTGCTAAAGCTTATGATGCTAAGAA 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 GACTTGGTTGGGTACTTTTGATACTCTTGAAGAAGCTGCTAAAGCTTATGATGCTAAGAA 930
Query 968 GCTTGAGTTTGATG--C-TATTG--------T-TG---CTGGAAATGTGTCCACTACTAA 1012
| |||||||||||| | | ||| | || ||||||||||||| |||| ||
Sbjct 931 GATTGAGTTTGATGCACTTGTTGCTTCTCTCTCTGTTTCTGGAAATGTGTCGACTA--AA 988
Query 1013 ACGTGATGTTTCTTCATCTGAGACTAGCCAATGCTCTCGTTCTTCACCTGTTGTTCCTGT 1072
|| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 989 AC-TGTTGTTTCTTCATCTGAGACTAGTCAATGCTCTCGTTCTTCACCTGTTGTTCCTGT 1047
Query 1073 TGAGCAAGATGACACTTCTGCATCAGCTCTCACTTGTGTCAACAACCCTGATGACGTCTC 1132
|||||||||||||||||| || ||||||||||||||||| |||||||||||| ||||
Sbjct 1048 TGAGCAAGATGACACTTCAGCTTCAGCTCTCACTTGTGT---CAACCCTGATGATGTCT- 1103
Query 1133 GACCGTTGCTCCAACTGCTCCAACTCCAAATGTTCCTGCTGGTGGAAACAAGGAAACGTT 1192
| || | |||||| |||||||||| |||||||||||||||||||||| |||
Sbjct 1104 ---C--TG-T-----TGCTCCGACTCCAAATGCTCCTGCTGGTGGAAACAAGGAAGTGTT 1152
Query 1193 GTTCGATTTCGACTTTACTAATCTACAGATCCCTGATTTTGGTTTCTTGGCAGAGGAGCA 1252
||||||||||||||||||| ||||||| ||||||||| |||||||||| |||||||||||
Sbjct 1153 GTTCGATTTCGACTTTACTGATCTACAAATCCCTGATCTTGGTTTCTTTGCAGAGGAGCA 1212
Query 1253 ACAAGACCTAGACTTCGATTGTTTCCTCGCGGATGATCAGTTTGATGATTTCGGCTTGCT 1312
||| || ||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1213 ACATGATCTAGACTTCGATTGTTTCCTCTCGGATGATCAGTTTGATGATTTCGGTTTGCT 1272
Query 1313 TGATGACATTCAAGGATTCGAAGATAACGGTCCAAGTGCGTTACCAGATTTCGACTTTGC 1372
|||||||||||||||||||||||| || |||||||| | ||||| ||||||||||||||
Sbjct 1273 TGATGACATTCAAGGATTCGAAGACAATGGTCCAAGCGAATTACCGGATTTCGACTTTGC 1332
Query 1373 GGATGTTGAAGATCTTCAGCTAGCTGACTCTAGTTTCGGTTTCCTTGATCAACTTGCTCC 1432
|||||||||||| || || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1333 GGATGTTGAAGAGCTCCAACTAGCTGACTCTAGTTTCGGTTTCCTTGATCAACTTGCCCC 1392
Query 1433 TATCAACATCTCTTGCCCATTAAAAAGTTTTGCAGCTTCATAGGATCTTGCTTAGTAATG 1492
| |||||||||||||||||||||||||||||||||||||||||||| || |||| | ||
Sbjct 1393 TCTCAACATCTCTTGCCCATTAAAAAGTTTTGCAGCTTCATAGGATTTTCCTTA--A-TG 1449
Query 1493 TT-AAGTGAGAAGAGTGTTTTGTTTT-TTCGTTTATGCTT-TAGTA-ATTTAAGACATAC 1548
|| |||||||||||||||||| ||| |||||||||| || |||| ||| |||||||||
Sbjct 1450 TTTAAGTGAGAAGAGTGTTTT-TTTACTTCGTTTATG-TTATAGTGTATTCAAGACATAC 1507
Query 1549 AAAAGTGTGTGTTCCGGATTGTAGTAAGATCTTAAGACATAAAGCCGGGTTTTGCAATTA 1608
|||| ||||||||||||| |||| ||| |||||||||||||||||||||||||||||||
Sbjct 1508 AAAACTGTGTGTTCCGGA--GTAGCAAGTTCTTAAGACATAAAGCCGGGTTTTGCAATTA 1565
Query 1609 GGAATCGAGTTTTAATGAAGTTTTAGTTTATGTTTGATTGATGTTTTGCTGATTCTGGTT 1668
||| | ||||||| || |||||||| ||||| || || |||||||||||||| |||||||
Sbjct 1566 GGAGTTGAGTTTTTATCAAGTTTTAATTTATATT-GAATGATGTTTTGCTGAGTCTGGTT 1624
Query 1669 TCTCTTCTCTTTTACTTTGGGTTTTT--CATTGTGCTTTTAAGAGCCGTCCAAAGTGAAA 1726
||| || | ||||||||||||| | ||||||||| ||||||||||||||||||||
Sbjct 1625 TCT-TT-TA----ACTTTGGGTTTTTTTCTTTGTGCTTT-AAGAGCCGTCCAAAGTGAAA 1677
Query 1727 GAGTTTTGATGAGAATTCCACTGTCAGTTTTATTACATCATTCTCCACTTTCATCTTTCG 1786
||| | | || || || | || | ||||||||||||||||||| ||| |
Sbjct 1678 GAG----G-TCAG--TT-----GT-A-TT--A---CATCATTCTCCACTTTCATTTTTTG 1718
Query 1787 TTAATGTGAAAAACAAAATATTAATGGAAGAAGCTTTTTAGTTT 1830
||||||| |||| |||||||||||||||||||| |||||| |||
Sbjct 1719 TTAATGTTAAAA-CAAAATATTAATGGAAGAAGTTTTTTAATTT 1761
Score = 532 bits (288), Expect = 3e-150
Identities = 353/381 (93%), Gaps = 18/381 (5%)
Strand=Plus/Plus
Query 81 GTG-AAAGGTTCGGTTTTTTGGG-TTTCGATCTGATA-ATCAACAAGAAAAAAGG-GTTT 136
||| ||||||||||||||| ||| ||||||||||| | ||||||||||||||||| ||||
Sbjct 84 GTGAAAAGGTTCGGTTTTTAGGGTTTTCGATCTGAAATATCAACAAGAAAAAAGGCGTTT 143
Query 137 GATTTATGTCGGCTGGGTTTGAATCGACTGTGATTTTGTCTTTGATTCATATCTCTTCTC 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 GATTTATGTCGGCTGGGTTTGAATCGACTGTGATTTTGTCTTTGATTCATATCTCTTCTC 203
Query 197 CGATTTCATCATCATCTTCCCCATCATCGTCGTCTTTGAAATCTTGTCTTCTCAACGCTC 256
||| | | ||| | |||||||||| |||||||||||| |||||||||||||||
Sbjct 204 CGA--T--T--TCA---T---CATCATCGTCTTCTTTGAAATCTGGTCTTCTCAACGCTC 251
Query 257 TTCACTTCTGCTGTAATAAGCAGAGGCTTGTTCTGGAGACTCCTTCTCTTTCCATGCGCT 316
|||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 252 TTCACTTCTGCTTTATTAAGCAGAGGCTTGTTCTTGAGACTCCTTCTCTTTCCATGCGCT 311
Query 317 TAAGACCCAAAAGGACTTGTTCTAGTGTTGAAGTCTTTGGGGGTTTTCACATAAAGCAGC 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 TAAGACCCAAAAGGACTTGTTCTAGTGTTGAAGTCTTTGGGGGTTTTCACATAAAGCAGC 371
Query 377 AAAAgttttcttttttcatagttcgctgagagttttgagtt-ttgataccaaaaaagttt 435
|||| |||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||
Sbjct 372 AAAAATTTTCTTTTTTCATAGTTCGCTGAGAGTTTTGAGTTCTTGGTAC-AAAAAAGTTT 430
Query 436 tgaccttttagagtgattttt 456
|||||||| ||||||||||||
Sbjct 431 TGACCTTTGAGAGTGATTTTT 451
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68714801980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5