BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68580.2
Length=2526
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475982 jgi|Araly1|475982|fgenesh2_kg.2__1112__AT1G68580.2 3362 0.0
> Ahg475982 jgi|Araly1|475982|fgenesh2_kg.2__1112__AT1G68580.2
Length=2358
Score = 3362 bits (1820), Expect = 0.0
Identities = 2162/2322 (93%), Gaps = 44/2322 (2%)
Strand=Plus/Plus
Query 86 CAAGAGCTCAAATTAGG---GTTATT-TT--TCCGATTTGAGAGA-TCCATTAACAATGG 138
||||||||||||||||| || || || |||||||||||||| || | | |||||
Sbjct 54 CAAGAGCTCAAATTAGGTTTTTTTTTCTTCCTCCGATTTGAGAGATTCGA-T---AATGG 109
Query 139 CGTGGTCGTCGGAAACGCCGTCGTATTGCGGCTGGAATGAGCGACATGTGAAGAACACGA 198
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 110 CGTGGTCGTCGGAAACGCCGTCGTATTGCGGTTGGAATGAGCTACATGTGAAGAACACGA 169
Query 199 AAGAAAAGATGGAGGTTCATTATTATCTCGAGAGGAAAGATGGAATTGCAGATCTAGCTG 258
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 170 AAGGAAAGATGGAGGTTCATTATTATCTTGAGAGGAAAGATGGAATTGCAGATCTAGCTG 229
Query 259 TTATTGGGAGGTTGAAGAA---TTCTAAACGCATGTCTTTTAGATACGCTTTGAAGAAGA 315
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 230 TTATTGGGAGGTTGAAGAATTCTTCTAAACGCATGTCTTTTAGATACGCTTTGAAGAAGA 289
Query 316 ATCGCTCTGTCTTGAAAAAGCTTAATTCTAAAGATGATGTTGCGCTTTGGCTCGATTCTA 375
|||||||||| ||||||||||||||||| |||||||||||| || ||||||||||||||
Sbjct 290 ATCGCTCTGTTTTGAAAAAGCTTAATTCCAAAGATGATGTTTCGAATTGGCTCGATTCTA 349
Query 376 TTGTTTCTGGTGAGATACCTCATGTAGCAGATGTACCAGCTACTGTTATGACTGAAAAAG 435
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 350 TTGTTTCTGGTGTGATGCCTCATGTAGCAGATGTACCAGCTACTGTTATGACTGAAAAGG 409
Query 436 ATGCTGGAGGGTTCAATATGAGCACTTTTATGAATAGGAAATTTCAGGAGCCTATTCAGC 495
||||||||||||| ||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 410 ATGCTGGAGGGTTAAATATGAGCACTTTTTTGAATGGGAAATTTAAGGAGCCTATTCAGC 469
Query 496 AGATCAAAACGTTCTCTTGGATGGGTTTTTCTTGGACTTGCAGGAAACGGCGTAAGCATT 555
||| |||||||||||| |||||||||| |||||||||||| |||||||||||||||||||
Sbjct 470 AGACCAAAACGTTCTCCTGGATGGGTTCTTCTTGGACTTGTAGGAAACGGCGTAAGCATT 529
Query 556 ATCAGTCTTATCTCCGGAATGGTGTCAGAATATCTGTGAATGATTTTGTGTATGTTTTAG 615
|||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 530 ATCAATCTTTTCTCCGGAATGGTGTTAGAATATCTGTGAATGATTTTGTGTATGTTTTAG 589
Query 616 CGGAGCAACATAAGAGACTTGTTGCATATATAGAAGACCTTTATGAGGATTCTAAAGGCA 675
|||||||| |||||||||||||||||||| | |||||||||||||||||||||||||| |
Sbjct 590 CGGAGCAAAATAAGAGACTTGTTGCATATTTGGAAGACCTTTATGAGGATTCTAAAGGGA 649
Query 676 AGAAGATGGTTGTGGTACGATGGTTTCACAAAACTGAGGAGGTTGGTTCTGTTTTATCTG 735
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 650 AGAAGATGGTTGTGGTACGATGGTTTCACAAAACTGAGGAGGTTGGTTCTGTTTTACCTG 709
Query 736 ATGATGA-TAATGACAGAGAGATAttt-ttttCTCTTAATCGGCAAGATATCAGTATTGA 793
||||| | ||||||||||||||| ||| ||||||||| |||| ||||||||||| |||||
Sbjct 710 ATGAT-ATTAATGACAGAGAGAT-TTTCTTTTCTCTTTATCGTCAAGATATCAGCATTGA 767
Query 794 GTGCATAGATTACTTGGCTACTGTCCTTAGTCCTCAGCATTATGAGAAATTTCTTAAGGT 853
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 768 GTGCATAGATTATTTGGCTACTGTCCTCAGTCCTCAGCATTATGAGAAATTTCTTAAGGT 827
Query 854 GCCGATGCATGTTCAGACAGTAGCTTTCTTCTGCCAGAAATTATATGGAGATGATGGTTT 913
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 828 GCTAATGCATGTTCAGCCAGTAGCTTTCTTCTGCCAGAAATTATATGGAGATGATGGCAT 887
Query 914 AAAGCCGTATGACATTACACAACTAGAAGGTTACTGGAGACAAGAAATGCTTAGATACTT 973
|||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 888 AAAGCCCTATGACATTACACAATTAGAAGGTTACTGGAAACAAGAAATGCTTAGATACTT 947
Query 974 GAATGTATCTATTTTAAAATCATTTGAAGGTGCTCAAGCCCCTGGTACTGACCCAGGATT 1033
||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 948 GAATGTATCCGTTTTAAAATCAGGTGAAGGTGCTCAAGCACCTGGTACTGACCCAGGATT 1007
Query 1034 AAAAGCTCCATTGGTTGGTTGTGTTGGGATTAGATCAAGGAAAAGACGCCGTCCTAGTCC 1093
| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1008 AGGAGCTCCATTGGTTGGTTGTGTTGGGATTAGATCAAGGAAAAGGCGTCGTCCTAGTCC 1067
Query 1094 TGTTGGTACTTTGAATGTATCATACGCAGGTGACATGAAAGGTGACTGCAAATCTAGTCC 1153
|||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1068 TGTTGGTACTTTGAATCTACCATCCGCAGGTGACATGAAAGGTGACTGCAAATCTAGTCC 1127
Query 1154 AGATTCTGTTTTGGCTG-TTACAGATGCTTCTATAT-TCAAGGGTGAC-GAAGATGGTTC 1210
|||||||||||||| || || ||||||||||||| | | ||||||| | |||||||||||
Sbjct 1128 AGATTCTGTTTTGGGTGCTT-CAGATGCTTCTATGTGT-AAGGGTG-CAGAAGATGGTTC 1184
Query 1211 TTCCCATCACATTAAAAAGGGTTCACTTATTGAAGTTCTTTCTGAAGATAGTGGCATCAG 1270
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1185 TTCCCATCACATTAAAAAGGGTTCACTTGTTGAAGTTCTTTCTGAAGATAGTGGCATCAG 1244
Query 1271 AGGTTGTTGGTTTAAGGCTCTGGTATTAAAGAAACACAAAGATAAGGTTAAGGTCCAGTA 1330
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1245 AGGTTGTTGGTTTAAGGCACTGATATTAAAGAAACACAAAGATAAGGTTAAGGTCCAGTA 1304
Query 1331 CCAAGATATTCAGGATGCAGACGATGAATCTAAAAAGCTAGAGGAATGGATTTTGACATC 1390
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1305 CCAAGATATTCAGGATGCAGATGATGAATCTAAAAAGCTAGAGGAGTGGATTTTGACATC 1364
Query 1391 TCGGGTTGCTGCTGGTGATCATCTGG-GGGATCTTAGAATCAAAGGACGGAAAGTAGTAA 1449
||||||||||| ||||||| ||| || || ||||||||||||||||||||||||||||
Sbjct 1365 TCGGGTTGCTGGTGGTGATGATCCGGTTGG-TCTTAGAATCAAAGGACGGAAAGTAGTAC 1423
Query 1450 GACCAATGCTGAAGCCCAGCAAAGAAAATGATGTATGTGTCATCGGGGTTGGTATGCCTG 1509
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1424 GACCAATGCTGAAGCCCGGCAAAGAAAATGATGTATGTGTCATCGGGGTTGGTATGCCTG 1483
Query 1510 TGGATGTGTGGTGGTGTGATGGATGGTGGGAAGGGATCGTGGTGCAGGAAGTTTCTGAAG 1569
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1484 TGGATGTGTGGTGGTGTGATGGGTGGTGGGAAGGGATCGTGGTGCAGAAAGTTTCTGAAG 1543
Query 1570 AGAAATTTGAAGTTTACTTGCCAGGCGAAAAGAAAATGTCTGCTTTCCATCGTAATGACC 1629
||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||
Sbjct 1544 AGAAATTTGAAGTTTACTTGCCAGGTGAAAAGAAAATGTCTGCCTTCCATCGTAGCGACC 1603
Query 1630 TCAGACAATCTCGGGAATGGTTGGATGATGAGTGGCTAAACATAAGATCAAGATCTGATA 1689
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1604 TTAGACAATCTCGGGAATGGTTGGATGATGAGTGGCTAAATATAAGATCAAGATCTGATA 1663
Query 1690 TTGTGAGTTCTGTCCTATCTTTGACGAAGAAAAAAGAGATGGAGGTGAAACATGATGAGA 1749
|||||||||||||||| ||||||| |||||| ||||| ||||||||||||||||||||
Sbjct 1664 TTGTGAGTTCTGTCCTGTCTTTGATAAAGAAAGAAGAGGCGGAGGTGAAACATGATGAGA 1723
Query 1750 AGTCGTCTGATGTTGGTGTTTGTAATGGTAG-GATGTCA-CCAAAGACTGAGGCTAAACG 1807
|| | ||||||||||| |||||||||||| | ||||||| || ||| ||||||||||||
Sbjct 1724 AGCCATCTGATGTTGGGGTTTGTAATGGT-GTGATGTCAGCC-AAGGGTGAGGCTAAACG 1781
Query 1808 CACCATCTCTCTTCCAGTAGCTACAACCAAAAAGTCACTACCTAAGCGACCAATTCCAGA 1867
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1782 TACCATCTCTCTTCCAGTAGCTACAACCAAAAAGTCATTACCTAAGCGACCAATTCCAGA 1841
Query 1868 TCTTCTAAAAGATGTCCTAGTCACTTCTGACTTAAAGTGGAAAAAATCATCGAGGAAGCG 1927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1842 TCTTCTAAAAGATGTCCTAGTCACTTCTGACTTAAAGTGGAAAAAATCATCGAGGAAACG 1901
Query 1928 GAATCGAGTTGTCAGTTGCTGTCCACACGATCCTAGCTTGAATGATGGTTTCTCTAGTGA 1987
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1902 CAATCGAGTTGTCAGTTGCTGTCCACACGATCCTAGCTTGAATAATGGTTTCTCTAGTGA 1961
Query 1988 AAGATCTTTGGATTGTGAGAACTGTAAGTTCATGGAAGAT-ACTTTTGGCTCTTCAGATG 2046
||||||||||||||||||||||||||||||||||| |||| | |||||| ||||| | ||
Sbjct 1962 AAGATCTTTGGATTGTGAGAACTGTAAGTTCATGGGAGATGA-TTTTGGTTCTTCGGTTG 2020
Query 2047 GACAGCATTTGACAGGTCTATTAATGTCGAGATGATCATCAGCTTGG-ACCTA--GTTAC 2103
| |||| |||||||||||||||||||||||||||||||||||||||| | || ||| |
Sbjct 2021 GGCAGCCTTTGACAGGTCTATTAATGTCGAGATGATCATCAGCTTGGGAA-TAAAGTTGC 2079
Query 2104 TTTTCTTCTTGTGAGGTACATATTACCCTGATGGGCATCTGCTCAATGCGATTTTGGGTT 2163
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2080 GTTTCTTCATGTGAGGTACATATTACC-TGATGGGCATCTGCTCAATGCGATTTTGGGTT 2138
Query 2164 TTAAGATTACTGGTAACTCGCAAGCTTTCT-TGGGATGGATTATAGGATTAGCTCGTAAT 2222
|| |||||||||| ||||||||| ||| | |||||||||| |||||||| |||||||||
Sbjct 2139 ATA-GATTACTGGTGACTCGCAAGATTT-TGTGGGATGGATGATAGGATTTGCTCGTAAT 2196
Query 2223 GGCATCCAAATTCGTTTGTGTACTTATGTTGTGACAGTAGGGCATAGTGCTTTAATTCAA 2282
|||||||||||||||||||||||||||||||| |||||||||| ||| |||||||| |||
Sbjct 2197 GGCATCCAAATTCGTTTGTGTACTTATGTTGTAACAGTAGGGCTTAGAGCTTTAATACAA 2256
Query 2283 TCAGCAAAATTTTGGATGCAGTAGAAGTAGGTAATAATAACATTACCTCGCTAGTGTTTT 2342
|||||||||||||||||||| ||||| |||||||||| | ||||||||||||||||||||
Sbjct 2257 TCAGCAAAATTTTGGATGCAATAGAAATAGGTAATAACAGCATTACCTCGCTAGTGTTTT 2316
Query 2343 AGGC-TTAATCAGTGTTTT-T-CT-CTTAGAATTAAGTTATC 2380
|||| |||||||||||||| | || |||||||||||||||||
Sbjct 2317 AGGCATTAATCAGTGTTTTATTCTGCTTAGAATTAAGTTATC 2358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95225612500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5