BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68590.1
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475984 jgi|Araly1|475984|fgenesh2_kg.2__1114__AT1G68590.1 1129 0.0
Ahg488420 jgi|Araly1|488420|fgenesh2_kg.6__1554__AT5G15760.1 148 4e-35
> Ahg475984 jgi|Araly1|475984|fgenesh2_kg.2__1114__AT1G68590.1
Length=764
Score = 1129 bits (611), Expect = 0.0
Identities = 718/767 (94%), Gaps = 18/767 (2%)
Strand=Plus/Plus
Query 1 TGACCATATCTTCCTTATCCATA--TTCTCACAAAATCTCCATTGTTCTCTGAGAAAACA 58
|||||||||||| |||||||||| |||||||||||||||||||| ||||||||| ||||
Sbjct 1 TGACCATATCTTTCTTATCCATATTTTCTCACAAAATCTCCATTGCTCTCTGAGATAACA 60
Query 59 CAAAAATGATGTCATCAATGGCACTCTCTTCTACTTCCCTCTGCTCTTCTTTCATCTCTC 118
| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 61 C-AAAATGATGTCATCAATGGCACTTTCTTCTGCTTCCCTCTGCTCTTCTTTCATCTCTC 119
Query 119 AACATCCAAAACTCTCCATCACTGCTTCTCCTCCATTGTTCCATACCCAAACAACCAAAC 178
||||||| || || || |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 120 AACATCCCAAGCTATCTATCACTGCTTCTCCTCCATTGTTCCATAACCAAACAACCAAAC 179
Query 179 CCATCTCTGTAAAACGGAAAATCATAACTCTAGCAGCTCCAGAGACACTCACCGCTGAAA 238
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 180 CCATCTCTGTAAAACGTAAAATCATAACTCTAGCAGCTCCAGAGACCCTCACGGCTGAAA 239
Query 239 CAGTCACCGGAATTGATACTTCCGACAACACTCCACAACAAACAATAAAGGTGGTGAAGC 298
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 240 CAGTCACCGGAATTGATACTTCCGACAACACTCCACAACAAACAACAAAGGTAGTGAAGC 299
Query 299 CAGATGAGAAATCAAGAGTGGTACTCAAGTTTGTGTGGATGGAGAAGAACATAGGATTAG 358
||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 300 CAGTTGAGAAGTCAAGAGTGGTTCTCAAGTTTGTGTGGATGGAGAAGAACATAGGATTAG 359
Query 359 GATTGGACCAACATGTACCTGGACATGGCACAATCCCACTTAGTCCTTACTTCTTCTGGC 418
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 360 GATTGGACCAACATGTACCTGGACATGGCACAATACCACTTAGTCCTTACTTCTTCTGGC 419
Query 419 CTAGGAAAGATGCTTGGGAAGAGCTTAAGTCTACTCTTGAAGCTAAACCATGGATCTCTC 478
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 420 CAAGGAAAGATGCTTGGGAAGAGCTTAAGTCTACTCTTGAAGCTAAGCCATGGATCTCTC 479
Query 479 AGAAGAAGATGATCATTCTTCTAAACCAAGCCACTGATATCATCAATCTCTGGCAACAAA 538
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 480 AGAAGAAGATGATCATTCTTCTTAACCAAGCCACTGACATCATCAATCTCTGGCAACAAA 539
Query 539 GTGGCGGCAATTTAACTTCTCAATAATCTCTTTTTTGA-TTTCTGCATTTCAAGAATTCA 597
||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||
Sbjct 540 GTGGCGGCAATTTAACTTCACAATAATCTCTTTTTTTAATTTCTGCATTTCAAGAATTCA 599
Query 598 --C--TTTGTCTATGAT--T-ATTATTGCTATTGAGAGTTTTTTGTTTATCTAAACAATA 650
| |||||||||||| | |||||||||||||||||||||| ||||||||||||||||
Sbjct 600 TTCACTTTGTCTATGATAATTATTATTGCTATTGAGAGTTTTT-GTTTATCTAAACAATA 658
Query 651 T--CCAATCACATTCGACATAAAAGATT-CATTTTATTGGAAAGAGAAAATGATAATAAA 707
| |||||||||||||||| |||||||| |||||||||| ||||||||| ||||||||||
Sbjct 659 TATCCAATCACATTCGACACAAAAGATTTCATTTTATTGCAAAGAGAAA-TGATAATAAA 717
Query 708 A-GCAAACA-TCAAGCAACTCTGAGTTATTGTTTCCTTGAAGGACAT 752
| ||||| | |||||||| | |||||| |||||||||||||||||||
Sbjct 718 AAGCAAAAAATCAAGCAATTTTGAGTTGTTGTTTCCTTGAAGGACAT 764
> Ahg488420 jgi|Araly1|488420|fgenesh2_kg.6__1554__AT5G15760.1
Length=621
Score = 148 bits (80), Expect = 4e-35
Identities = 206/263 (78%), Gaps = 24/263 (9%)
Strand=Plus/Plus
Query 292 GTGAAGCCAGAT-GAGAAATC-AAGAGTGGTACTCAAGTTTGTGTGGATGGAGAAGAACA 349
|||||||| | | |||||| | ||| |||||||| ||||||||||||||| | ||| |||
Sbjct 319 GTGAAGCC-GCTGGAGAAACCAAAG-GTGGTACTAAAGTTTGTGTGGATGCAAAAGGACA 376
Query 350 TAGGA-TTAG-GATTGGACCAACATG-TACCTGGACATGGCACAATCCCACTTAGTCCTT 406
||||| || | | || |||| | ||| | || || ||| ||||||||||||||||| |
Sbjct 377 TAGGAGTT-GCG-TTAGACC-ATATGATTCCAGGGTTTGGAACAATCCCACTTAGTCCAT 433
Query 407 ACTTCTTCTGGCCTAGGAAAGATGCTTGGGAAGAGCTTAA-GTCTACTCTT-GA-AGCTA 463
||| ||||||||||||||||||||||||||||||||| || | || | || || ||| |
Sbjct 434 ACTACTTCTGGCCTAGGAAAGATGCTTGGGAAGAGCTCAAAG-CTT-TGTTAGAGAGC-A 490
Query 464 AACCATGGATCTCTCAGAAGAA--GATGATCATTCTTC-TAAACCAAGCCACTGATATCA 520
| || ||||||||| || | | | || ||| || | |||||||| || || ||||
Sbjct 491 AGCCTTGGATCTCTGAGCTTCATCGC-G-TC-TTCCTCCTTAACCAAGCTACAGACATCA 547
Query 521 TCAATCTCTGGCAA-CAAAGTGG 542
||||||| |||||| ||| ||||
Sbjct 548 TCAATCTTTGGCAATCAA-GTGG 569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27753483576
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5