BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68600.1
Length=1875
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475986 jgi|Araly1|475986|fgenesh2_kg.2__1116__AT1G68600.1 2837 0.0
Ahg319696 jgi|Araly1|319696|fgenesh1_pm.C_scaffold_3002712 1314 0.0
> Ahg475986 jgi|Araly1|475986|fgenesh2_kg.2__1116__AT1G68600.1
Length=1867
Score = 2837 bits (1536), Expect = 0.0
Identities = 1773/1884 (94%), Gaps = 30/1884 (2%)
Strand=Plus/Plus
Query 5 AGTACAAAACAAATCTTGATAAATAGATAAATAAACATCTTTCTATTCGTAAGGACGACA 64
||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||| |||
Sbjct 1 AGTACAAAACAAATCTTGATAAATAAATAAATAAACATCTTTCAATTCTTAAGGACAACA 60
Query 65 AGAATCTCTCAGGTTCTGTAGAATTGTCAGAATCATTTCTAATGGGAGGTAAAATGGGAT 124
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 61 AGAATCTCTCAGGTTCTGTAGAATTGTCAGAATAATTTCTAATGGGAGGCAAAATGGGAT 120
Query 125 CAGTACCGGAGCAAAACACAGAGAAGCTTCTCTGGCAGTCAAGCGACGTCGCTGATAGCC 184
|| ||||||||||||||| |||||||||||| ||||||||||| || ||||| |||||||
Sbjct 121 CACTACCGGAGCAAAACAGAGAGAAGCTTCTTTGGCAGTCAAGTGATGTCGCCGATAGCC 180
Query 185 GTGACTCCAAGTTCCGGTGTTGCTCGTGGAGGGCTCTCTACGAGGCTCCGGCGAAGTTGT 244
||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 GTGACTCGAAGTTTCGGTGTTGCTCTTGGAGGGCTCTCTACGAGGCTCCGGCGAAGTTGT 240
Query 245 ACGCGCTGGGACATTCTGATCGTAGGAAACTTTACTTCTCCATCAAGATGGGAATTGCTT 304
| ||| ||||||||||||||||| |||| |||||||||||| |||||||||| |||||||
Sbjct 241 ATGCGATGGGACATTCTGATCGTCGGAAGCTTTACTTCTCCTTCAAGATGGGGATTGCTT 300
Query 305 TGGCACTCTGTTCTTTCGTCATCTTTCTCAAAGAGCCGCTTCAAGATGCTAGTAAATTCG 364
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 301 TGGCACTCTGTTCTTTCGTCATCTTTCTCAAAGAACCGCTTCAAGATGCCAGTAAATTCG 360
Query 365 CAGTTTGGGCGATTCTCACCGTCGTTCTCATTTTCGAGTATTACGTCGGAGCAACTTTGG 424
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 361 CAGTTTGGGCGATTCTCACCGTCGTTCTCATTTTCGAGTATTATGTCGGAGCAACTTTGG 420
Query 425 TTAAAGGATTCAATAGAGCATTAGGCACAATGTTAGCTGGAGGACTTGCTCTCGGCGTCG 484
||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 421 TTAAAGGATTCAATAGAGCTTTAGGCACAATGTTAGCTGGGGGACTTGCTCTCGGGGTCG 480
Query 485 CGCAGCTCTCTGTTTTAGCAGGAGAGTTTGAAGAAGTCATCATCGTAATCTGCATATTCC 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CGCAGCTCTCTGTTTTAGCAGGAGAGTTTGAAGAAGTCATCATCGTAATCTGCATATTCC 540
Query 545 TTGCAGGTTTTGGTGCTAGTTATTTGAAACTATACGCGTCCATGAAACCATACGAATACG 604
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 541 TTGCAGGTTTTGGTGCTAGTTATTTGAAACTCTACGCGGCCATGAAACCATACGAATACG 600
Query 605 CATTCAGAGTGTTCAAGTTGACATATTGTATCGTTCTTGTTTCCGGGAACAACTCAAGAG 664
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 601 CATTCAGGGTGTTCAAGTTGACATATTGTATAGTTCTTGTTTCCGGGAACAACTCAAGAG 660
Query 665 ACTTCTTAAGCACTGCTTATTACAGGATTTTGCTTATTGGTCTTGGTGCAACCATTTGTT 724
||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 661 ACTTCTTAAGCACGGCTTATTACAGGATCTTGCTTATTGTTCTTGGTGCAACCATTTGTT 720
Query 725 TGCTTGTGAATGTATTTTTATTTCCGATATGGGCCGGAGAAGATCTCCATAAACTGGTGG 784
||||||||||||||||| | |||||||||||||| || ||||||||||||||||||||||
Sbjct 721 TGCTTGTGAATGTATTTCTGTTTCCGATATGGGCGGGGGAAGATCTCCATAAACTGGTGG 780
Query 785 CTAAAAACTTCAAGAATGTTGCAAATTCCCTAGAAGGATGTGTTAATGGTTACTTGCAAT 844
||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 781 CTAAAAACTTCAAGACTGTGGCAAATTCCTTAGAAGGATGTGTTAATGGTTACTTGCAAT 840
Query 845 GTGTCGAATACGAGAGAATACCGTCGAAGATACTCACGTACCAAGCTTCAGATGATCCAT 904
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GTGTGGAATACGAGAGAATACCGTCGAAGATACTCACGTACCAAGCTTCAGATGATCCAT 900
Query 905 TATACAGCGGGTACAGATCCGCTGTTCAATCTACAAGCCAAGAAGATTCTTTGCTTGATT 964
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TATACAGCGGATACAGATCCGCTGTTCAATCTACAAGCCAAGAAGATTCTTTGCTTGATT 960
Query 965 TCGCTATATGGGAGCCTCCACATGGACCTTACAAAACGTTTAACCATCCTTGGAAAAACT 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TCGCTATATGGGAGCCTCCACATGGACCTTACAAAACGTTTAACCATCCTTGGAAAAACT 1020
Query 1025 ATGTCAAACTTAGTGGTGCAGTGAGGCATTGCGCGTTCACAGTCATGGCAATGCATGGAT 1084
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1021 ACGTCAAACTTAGTGGTGCAGTGAGGCATTGCGCTTTCACAGTCATGGCAATGCATGGAT 1080
Query 1085 GCATTCTTTCAGAAATACAGGCATCTCCAGAGAAAAGACATGTTTTCAGTAACGAGCTTC 1144
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1081 GCATTCTTTCAGAAATACAGGCAGCTCCAGAGAAAAGACATGTTTTCAGTAACGAGCTTC 1140
Query 1145 GGAGAGTTGGTAATGAAGGAGCAAAAGTATTACGTTTGTTTGGAGAAAAAGTAGAGAAAA 1204
|||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||
Sbjct 1141 GGAGAGTTGGTAATGAAGGAGCAAAAATTTTACGTTTGTTTGGAGAAAAAGTGGAGAAAA 1200
Query 1205 TGGAGAAGCTAAGCCTAAGCCTAGGAGAGATTCTGAAAGACGTTCAACGTGCAGCTGAGG 1264
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 1201 TGGAGAAGCTAAGCCTAAGCCTCGGAGAGATTCTGAAAGACGTTCAACGAGCAGCCGAGG 1260
Query 1265 CACTACAAATGAAAATAGATAGTAAATCATATCTTCTTGTCAACTCAGAAAGCTGGGCAG 1324
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1261 CACTACAAATGAAGATAGATAGTAAATCATATCTTCTTGTCAACTCAGAGAGCTGGGCAG 1320
Query 1325 CTATTAAAGAGCAAGCTGAAGCGGAAGAAGCTCGAGAAAACGACCAAGAAGCCAAAGACG 1384
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1321 CTATTCAAGAGCAAGCTGAAGCCGAAGAAGCTCGAGAAAACGACCAAGAAGCCAAAGACG 1380
Query 1385 ACGAGACCAAAGTGATCAAATCCTTAAGCCAGATTTGGGATACTAACAACAACAACAACC 1444
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1381 ATGAGACCAAAGTGATCAAATCCTTAAGCCAGATTTGGGATACTAACAACAACAAT--C- 1437
Query 1445 ATCAGAGTAATGATCAATCTCAGCATTGGATGTCAACAGAGAGTATGATGTTAAAGAACC 1504
|||||||| |||||||||||||| |||||||||||||||||||||||||| | |||||||
Sbjct 1438 ATCAGAGTCATGATCAATCTCAGAATTGGATGTCAACAGAGAGTATGATGCTCAAGAACC 1497
Query 1505 GAGAGATGTGGCCAAGTATGTCCTTCATTGATGGTACTGTGGTGAATGAGATAGAATGTA 1564
|||| ||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1498 GAGAAATGTGGCCAAGCATGTCCTTCATTGGTGGTACTGTGGTGAATGAGATTGAATGTA 1557
Query 1565 AAGTATACGAAAGTGCGAGTTCGTTGTCTCTGGCTACGTTCGCTTCCCTTCTGATTGAGT 1624
||||||||||||| ||||||||||||||||| ||||| || ||||||||||| || ||||
Sbjct 1558 AAGTATACGAAAGCGCGAGTTCGTTGTCTCTAGCTACATTTGCTTCCCTTCTCATCGAGT 1617
Query 1625 TTGTTGCAAGGCTGCAAAACATTGTCAATGCTTTTGAGGAGCTTAGCACAAAAGCTGGTT 1684
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1618 TTGTTGCAAGGCTCCAAAACATTGTCAATGCATTTGAGGAGCTTAGCACAAAAGCTGGTT 1677
Query 1685 TCAAAGATGCTGTTGATCAGATTCCTAAGGTTTGAATGTGTGTGAAAGAAGTGATTCGGA 1744
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1678 TCAAAGATCCTGTTGATCAGATTCCTAAGGTTTGAATGTGTG--AAAGAAGTGAT----A 1731
Query 1745 AGTGATACAACGTTAAATATTATGAACATGGTGTAATAAGTAATTTGTAAGCAAATT--- 1801
||||||||| ||||||||| ||||||||||| || |||||||||||||||
Sbjct 1732 -------CAACGTTAA-TATTATGAATATGGTGTAATATGTGATTTGTAAGCAAATTAAA 1783
Query 1802 T--ACTAAAACAAACGTAAGTTACATTATTCTTTTGTTT-T-------ATGTATATTTGT 1851
| |||||||||||| |||||||| |||||||||||||| | ||||||||||||
Sbjct 1784 TTTACTAAAACAAACATAAGTTACTTTATTCTTTTGTTTATTTTCTTGATGTATATTTGT 1843
Query 1852 TTAAATCATTTTGATTGTGAAAGC 1875
|||||||||||||||||||| |||
Sbjct 1844 TTAAATCATTTTGATTGTGAGAGC 1867
> Ahg319696 jgi|Araly1|319696|fgenesh1_pm.C_scaffold_3002712
Length=1620
Score = 1314 bits (711), Expect = 0.0
Identities = 1233/1475 (84%), Gaps = 75/1475 (5%)
Strand=Plus/Plus
Query 251 TGGGACATTCTGATCGTAGGAA--ACT-TTACTTCTCCATCAAGATGGGAATTGCT-TTG 306
|||||||||| ||||||| ||| | | || |||| | ||||||||||||| ||| ||
Sbjct 95 TGGGACATTCAGATCGTA-GAAGGA-TCTT-CTTCGCGGTCAAGATGGGAATGGCTCTT- 150
Query 307 GCACTCTG-TTCTTTCGTCATCTTTCTCAAAGAGCCGCTT-CAAGATGCTAGTAAATTCG 364
|| ||||| | | || || ||||| |||||||||||| || || ||||||||||||| |
Sbjct 151 GCCCTCTGCTCCATT-GTTATCTTCCTCAAAGAGCCG-TTGCATGATGCTAGTAAATACT 208
Query 365 CAGT-TTGGGCGATTCTCACCGTCGTTC-TCATTTTCGAGTATTACGTCGGAGCAACTTT 422
| || | |||| || ||||| || | || | |||||||||||||||| |||||||||||
Sbjct 209 CTGTATGGGGC-ATCCTCACTGT-GGTCGTGGTTTTCGAGTATTACGTAGGAGCAACTTT 266
Query 423 GGTTAAAGGATTCAATAGAGC-ATTAGGCACAATGT-TAGCTGGAGGACTTGCTCTCGGC 480
||| ||||||||||| ||||| | ||||||| | | | ||||||||||| ||||| |||
Sbjct 267 GGTCAAAGGATTCAACAGAGCGA-TAGGCACGGTATCT-GCTGGAGGACTCGCTCTTGGC 324
Query 481 GTCGCGCA-GCTCTCTGTTTTAGCAGGAGAGTTTGA-AG-AAGTCATCATCGTAATCTGC 537
||||| | ||||||||||||| ||||||| ||| | || ||| ||||||| ||||||||
Sbjct 325 ATCGCG-AGGCTCTCTGTTTTATCAGGAGA-TTT-AGAGCAAGCCATCATCATAATCTGC 381
Query 538 ATATTCCTTGCAGGTTTTGGTGCTAGTTATTTGAAACTATACGCGTCCATGAAACCATAC 597
|| |||||||||||||| | ||||||||| |||||| || || |||||||||||||
Sbjct 382 ATTTTCCTTGCAGGTTTCATTTCTAGTTATTCGAAACTCCACCCGGCCATGAAACCATAT 441
Query 598 GAATACGCATTCAGAGTGTTCAAGTTGACATAT-TGTATCGTTCTTGTTTCCGGGAACAA 656
||||| |||||||| |||||| |||||||| | ||||| ||||| ||||| ||||||||
Sbjct 442 GAATATGCATTCAGGGTGTTCTTGTTGACAT-TCTGTATTGTTCTGGTTTCGGGGAACAA 500
Query 657 CT-CAAGAGACTTCTTAAGCACTGCTTATTACAGGATTTTGCTTATTGGTCTTGGTGCAA 715
| | |||| ||||| ||||| || ||||||||| ||||| |||||| | |||||||||
Sbjct 501 -TACCGGAGATTTCTTCAGCACAGCGTATTACAGGTTTTTGTTTATTGTTATTGGTGCAA 559
Query 716 CCATTTGTTTGCTTGTGAATGTATTTTTATTTCCGATATGGGCCGGAGAAGATCTCCATA 775
||| |||||| |||||||| |||| ||||||||||||||||||| |||||||||||||
Sbjct 560 CCACATGTTTGGTTGTGAATATATTCATATTTCCGATATGGGCCGGGGAAGATCTCCATA 619
Query 776 AACTGGTGGCTAAAAACTTCAAGAATGTTGCAAATTCCCTAGAAGGATGTGTTAATGGTT 835
|||||||||| || || ||||||| ||| |||||||||||||||||||||| |||||| |
Sbjct 620 AACTGGTGGCCAATAATTTCAAGAGTGTGGCAAATTCCCTAGAAGGATGTGCTAATGGCT 679
Query 836 ACTTGCAATGTGTCGAATACGAGAGAATACCGTCGAAGATACTCACGTACCAAGCTTCAG 895
| ||||||||||| |||||||||||| |||| |||||||| |||||||||||| | || |
Sbjct 680 ATTTGCAATGTGTGGAATACGAGAGAGTACCCTCGAAGATTCTCACGTACCAAACATCTG 739
Query 896 ATGATCCATTATACAGCGGGTACAGATCCGCTGTTCAATCTACAAGCCAAGAAGATTCTT 955
||||||||||||| || |||||||| |||||| ||||||| |||| |||||||| |||
Sbjct 740 ATGATCCATTATATAGTGGGTACAGGTCCGCTATTCAATCAACAAATCAAGAAGAATCTC 799
Query 956 TGCTTGATTTCGCTATATGGGAGCCTCCACATGGACCTTACAAAACGTTTAACCATCCTT 1015
|||| ||||| || |||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 800 TGCTCGATTTTGCCATATGGGAGCCTCCACATGGACCTTACAGAACGTTTAACCATCCAT 859
Query 1016 GGAAAAACTATGTCAAACTTAGTGGTGCAGTGAGGCATTGCGCGTTCACAGTCATGGCAA 1075
||||||||||||||||||||||||||||| | |||||||| || ||||| ||||||||||
Sbjct 860 GGAAAAACTATGTCAAACTTAGTGGTGCATTAAGGCATTGTGCTTTCACCGTCATGGCAA 919
Query 1076 TGCATGGATGCATTCTTTCAGAAATACAGGCATCTCCAGAGAAAAGACATGTTTTCAGTA 1135
| ||||| |||||||||||||| ||||||||| ||||||||||| |||| | |||| ||
Sbjct 920 TACATGGTTGCATTCTTTCAGAGATACAGGCAGCTCCAGAGAAACGACAGGCTTTCCGTC 979
Query 1136 ACGAGCTTCGGAGAGTTGGTAATGAAGGAGCAAAAGTAT-TACGTTTGTTTGGAGAAAAA 1194
| ||||||| |||||||| |||||||| |||||||| | | |||||| ||||||| |||
Sbjct 980 ATGAGCTTCAAAGAGTTGGCAATGAAGGCGCAAAAGT-TCTGCGTTTGATTGGAGACAAA 1038
Query 1195 GTAGAGAAAATGGAGAAGCTAAGCCTAAGCCTAGGAGAGATTCTGAAA-GACGTTCAACG 1253
|| |||||||||||||||||||||| || ||| |||||||| ||| ||||||||||
Sbjct 1039 GTGGAGAAAATGGAGAAGCTAAGCC----CC-AGG-GAGATTCT-AAATGACGTTCAACT 1091
Query 1254 TGCAGCTGAGGCA-CTACAAATGAAAATAGATAGTAAATCATATCTTCTTGTCAACTCAG 1312
|||||| |||| | ||||| ||||||||||| |||||||| || |||||||| |||||||
Sbjct 1092 TGCAGCAGAGG-AGCTACAGATGAAAATAGACAGTAAATCCTACCTTCTTGTGAACTCAG 1150
Query 1313 AAAGCTGGGCAGCTATTAAAGAGCAAGCTGAAGCGGAAGAAGCTCGAGAAAACGACCAAG 1372
|||||||||| |||| |||||||||||||||||| |||| || | || | || | |
Sbjct 1151 AAAGCTGGGCGGCTACTAAAGAGCAAGCTGAAGCTGAAGTAGAT-GA-A----GA--A-G 1201
Query 1373 AAGCCAAAGACGACGAGACCAAAGTGATCAAATCCTTAAGCCAGATTTGGGATACTAACA 1432
|||| | |||||||||||||||||||||||||||| |||||||||||||| | ||
Sbjct 1202 AAGCT-----C-ACGAGACCAAAGTGATCAAATCCTTAAGTCAGATTTGGGATACCAGCA 1255
Query 1433 --A-CAACAACAACCA---TC-AG--AGT---AATGATCAATCTCAGCAT-TGG-ATGTC 1478
| || ||||||||| || | ||| |||||| |||||||| || ||| | ||
Sbjct 1256 GTAGCAGCAACAACCAGAATCCAACTAGTGGTAATGATGAATCTCAG-ATATGGGAA-TC 1313
Query 1479 AACAGAGAGTATGATGTTAAAGAA-CCGAGAGATGTGGCCAAGTATGTCCTTCATTGATG 1537
|||||||||||||||||||| ||| ||| |||| ||||||||| |||||||||||| ||
Sbjct 1314 AACAGAGAGTATGATGTTAA-GAAACCGCGAGACATGGCCAAGTGTGTCCTTCATTGGTG 1372
Query 1538 GTACTGTGGTGAATGAGATAGAATGTAAAGTATACGAAAGTGCGAGTTCGTTGTCTCTGG 1597
|| | ||||| ||||||| || || ||||||||||||||| |||||||| |||||| | |
Sbjct 1373 GTTCAGTGGTAAATGAGACAGTATATAAAGTATACGAAAGCGCGAGTTCTTTGTCTTTAG 1432
Query 1598 CTACGTTCGCTTCCCTTCTGATTGAGTTTGTTGCAAGGCTGCAAAACATTGTCAATGCTT 1657
||||||| ||||||||||| || |||||||||||||||||| | ||| |||| || || |
Sbjct 1433 CTACGTTTGCTTCCCTTCTCATCGAGTTTGTTGCAAGGCTGGAGAACCTTGTAAACGCCT 1492
Query 1658 TTGAGGAGCTTAGCACAAAAGCTGGTTTCAAAGAT 1692
|||||||||| |||| |||||| | ||||||||||
Sbjct 1493 TTGAGGAGCTAAGCAGAAAAGCAGATTTCAAAGAT 1527
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70428863005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5