BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68610.1
Length=483
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926146 jgi|Araly1|926146|scaffold_201707.1 765 0.0
> Ahg926146 jgi|Araly1|926146|scaffold_201707.1
Length=525
Score = 765 bits (414), Expect = 0.0
Identities = 457/478 (96%), Gaps = 2/478 (0%)
Strand=Plus/Plus
Query 1 ATGAACCTTTCCTCTAACGACCAACCAAGCCAAGGCCGTATCAAGGCCAAGGATTGGTCG 60
||||||| |||||| | |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 23 ATGAACCCTTCCTCCACCGACCAACCAAGCCAAGGCCGTGTCAAGGCCAAGGATTGGTCG 82
Query 61 ACTGATTTGTGTGAATGTTGGATGGACATAAACTCATGCTGCTTGACTTGTTGGTGCCCT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 83 ACTGATTTGTGTGAATGTTGGATGGACATAAACTCATGCTGCTTGACTTGTTGGTGCCCA 142
Query 121 TGTGTTGCCTTTGGACGCATCGCGGAGGTTGTAGACAGAGGTTCCACATCGTGTGGTGTG 180
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 143 TGTGTTGCCTTTGGACGCATCGCGGAAGTTGTAGACAGAGGATCCACATCGTGTGGTGTG 202
Query 181 AGCGGAGCGATGTACATGATCATATTCATGTTGACCGGGTATGGAGGAAGCAGTCTCTAC 240
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 203 AGCGGAGCGATGTACATGATCATATTCATGTTGACCGGATATGGAGGGAGCAGTCTCTAC 262
Query 241 TCTTGCTTTTACCGAACCAAACTTAGAGCCCAATACAATCTCAAGGAGAGACCTTGTTGT 300
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 263 TCTTGCTTTTACCGAACCAAACTAAGAGCACAATACAATCTCAAGGAGAGACCTTGTTGT 322
Query 301 GACTGTTGTGTCCACTTTTGTTGCGAGCCATGCGCTCTTTGTCAAGAGTATAGGCAACTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 GACTGTTGTGTCCACTTTTGTTGCGAGCCATGCGCTCTTTGTCAAGAGTATAGGCAACTT 382
Query 361 CAACACAACCGCGATTTGGACTTGGTC-ATCGGGTGGCATGGGAATATGGAACGACATGC 419
||||||||||||||||| |||||| || ||||||||||||||||||||||||||| ||||
Sbjct 383 CAACACAACCGCGATTTAGACTTG-TCCATCGGGTGGCATGGGAATATGGAACGAAATGC 441
Query 420 ACGACTTGCTGCCTCTACACCTTCGGCTCCTCCACTTCAAGCACCCATGTCTAGATTG 477
|||||| ||||| ||| | ||||||||||||||||||||| | |||||||||||||||
Sbjct 442 ACGACTGGCTGCATCTGCGCCTTCGGCTCCTCCACTTCAACCGCCCATGTCTAGATTG 499
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17513415351
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5