BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G68630.1

Length=1402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg315881 jgi|Araly1|315881|fgenesh1_pm.C_scaffold_2000914           459    3e-128
  Ahg475990 jgi|Araly1|475990|fgenesh2_kg.2__1120__AT1G68640.1         383    2e-105


> Ahg315881 jgi|Araly1|315881|fgenesh1_pm.C_scaffold_2000914
Length=414

 Score =  459 bits (248),  Expect = 3e-128
 Identities = 274/287 (95%), Gaps = 0/287 (0%)
 Strand=Plus/Plus

Query  314  CTTGTATGAACGCAGGTTTGATTCATCTAGCGTTAGGCTTTATTGGTTGTAGCTGGCTCT  373
            ||||||||||||| ||||||||||||||||||||||||||| | ||||| ||||||||||
Sbjct  128  CTTGTATGAACGCTGGTTTGATTCATCTAGCGTTAGGCTTTGTGGGTTGCAGCTGGCTCT  187

Query  374  ACGCTTTTCCAAACCGGTCTAGGCTTAGGGAACATTTCGCATTGCCTGAAGAACCATGCC  433
            ||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  188  ACGCTTTTCCAAGTCGGTCTAGGCTTAGGGAACATTTCGCATTGCCTGAGGAACCATGCC  247

Query  434  GTGACTTTTTAGTCCATCTCTTTTGCACCCCATGCGCTATCTGCCAAGAGTCCCGAGAAC  493
            |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct  248  GTGACTTTTTAGTCCATCTCTTTTGCACCCCATGTGCTATATGCCAAGAGTCCCGGGAAC  307

Query  494  TCAAGAACCGCGGCGCTGATCCTTCTATCGGATGGCTTTCGAATGTAGAGAAATGGAGCC  553
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  308  TCAAGAACCGCGGCGCTGACCCTTCTATCGGATGGCTTTCGAATGTAGAGAAATGGAGCC  367

Query  554  GTGAGAAAGTAACACCTCCCATAGTTGTACCTGGCATGATTCGATGA  600
            | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  368  GAGAGAAAGTAACACCTCCCATAGTTGTACCTGGCATGATTCGGTGA  414


 Score =  207 bits (112),  Expect = 1e-52
 Identities = 122/127 (96%), Gaps = 0/127 (0%)
 Strand=Plus/Plus

Query  115  ATGTACGGGAATGGGCCGGTGTTTAAGGCGGAGGGGACGTCGTTCCGGGATCAACCATAC  174
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTACGGGAATGGGCCGGTGTTCAAGGCGGAGGGGACGTCGTTCCGGGATCAACCATAC  60

Query  175  GCGGAACAGCTTCCTCAGGGACTATGGACCACAGGGCTTTGCGATTGTCACGAAGATGCT  234
            || ||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct  61   GCCGAACAGCTTCCTCAGGGACTATGGACCACCGGTCTTTGTGATTGTCACGAAGATGCT  120

Query  235  CACATTT  241
            |||||||
Sbjct  121  CACATTT  127


> Ahg475990 jgi|Araly1|475990|fgenesh2_kg.2__1120__AT1G68640.1
Length=1604

 Score =  383 bits (207),  Expect = 2e-105
 Identities = 235/249 (94%), Gaps = 0/249 (0%)
 Strand=Plus/Minus

Query  1115  CCTGGCGAAGGAAGTTTTCAAGAGTGCCAAGTTTGCCCATAGCCATAGCCATATGACCCA  1174
             |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  1367  CCTGGCGAAGAAAGTTTTCGAGAGTGCCAAGTTTGCCCATAGCCATAGCCATATGACCCA  1308

Query  1175  TATAATCTGCAACATTTGCTGAAGAGTTTGGACCCATTGAAGCAGAAGAAAGCGTCTCGA  1234
             |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct  1307  TATAATCTGCAACATTTGCTGAAGAGTTAGGACCCATTGAAGCAGAGGAAAGCGTCTCTA  1248

Query  1235  GAAGTGATTGTTGTAGAGCTTCCATGCCTTGTGACAATGCATCCTCTGCTTGTTGAGACG  1294
             |||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  1247  GAAGCGATTGTTGCAGAGCTTCCATGCCTTGTGACAATGCATCCTCTGCTTGCTGAGACG  1188

Query  1295  ATTGCTGAAGGTTGCAAATGCCTATCAACTGCTGGTCCGTCAATGGATCCACATGGTTCC  1354
             | || ||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct  1187  ACTGTTGAAGGTTGCAGATGCCTATCAACTGCTGATCCGTCAACGGATCAACATGGTTCC  1128

Query  1355  CCAATATCT  1363
             |||||||||
Sbjct  1127  CCAATATCT  1119


 Score =  239 bits (129),  Expect = 5e-62
 Identities = 152/163 (93%), Gaps = 1/163 (1%)
 Strand=Plus/Minus

Query  875   TTTTATTTAGTCTCTAGGTCTGGCTAACCATAGAGAGCTAAGTGCTCTAAGCCGAGAAAT  934
             |||| ||||||| ||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct  1519  TTTTCTTTAGTCCCTAGGCCGGGCTAACCATAGAGAGCTAAGTGCTCTAAGCCGAGAAAT  1460

Query  935   ATAATCGTGGATGACCAAAAAGGCGCGAGCAGCTTGTCGTGTGGTGAGAATTCTGTGAAG  994
             ||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  1459  ATAGTCATGGATGACCAAAAAGGCGCGAGCAGCTTGTCGTGTGGTAAGAATTCTGTGAAG  1400

Query  995   CTGTTGCAGAGTTTGTTGCCTCAATAAATCAGCCTG-CAAAGA  1036
             |||||| ||||||||||||||||||| ||||||||| | ||||
Sbjct  1399  CTGTTGTAGAGTTTGTTGCCTCAATAGATCAGCCTGGCGAAGA  1357


 Score =  108 bits (58),  Expect = 1e-22
 Identities = 65/68 (96%), Gaps = 1/68 (1%)
 Strand=Plus/Minus

Query  718   GATTCTGAATGGTAACGTTCACTACCAACTAAATAAACAGATGATCTAAT-ACACTAAAG  776
             |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct  1604  GATTCTGAATGGTAACGTTCACTACCAACTAAATAAACAGATGATCTAAAGACACTAAAG  1545

Query  777   AGAAGAGC  784
             || |||||
Sbjct  1544  AGGAGAGC  1537



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 52412177120


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5