BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68640.1
Length=1762
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475990 jgi|Araly1|475990|fgenesh2_kg.2__1120__AT1G68640.1 2045 0.0
> Ahg475990 jgi|Araly1|475990|fgenesh2_kg.2__1120__AT1G68640.1
Length=1604
Score = 2045 bits (1107), Expect = 0.0
Identities = 1290/1376 (94%), Gaps = 22/1376 (2%)
Strand=Plus/Plus
Query 232 TCAACAACAATGCAGAGCAGCTTCAAAACCGTTCCTTTCACTCCTGATTTCTACTCTCAG 291
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 164 TCAACAACAATGCAGAGCAGCTTCAAAACCGTTCCTTTCAATCCTGATTTCTACTCTCAG 223
Query 292 TCTTCTTACTTCTTCAGAGGAGATAGTTGTCTTGAGGAGTTTCATCAACCAGTCAATGGT 351
|| |||| ||||||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 224 TCCTCTTTCTTCTTCAGAGGAGATAGTTGCCTTGAAGAGTTTCATCAACCAGTTAATGGT 283
Query 352 TTTCACCATGAAGAAGCTATCGATTTAAGTCCAAATGTCACTATTGCTTCAGCTAACTTA 411
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 284 TTTCACCATGAAGAAGCTATCGATTTAAGTCCAAATGTCACTATTGCTTCAGCCAACTTA 343
Query 412 CACTACACGACGTTTGATACGGTTATGGATTgtggtggtggtggtggtggtggCTTGAGG 471
||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 344 CACTACACGACGTTTGATACGGTTATGGA-----GT-GTGGTGGTGGTGGTGGCTTGAGA 397
Query 472 GAGAGACTTGAAGGAGGAGAAGAGGAGTGTTTGGACACAGGGCAACTAGTGTACCAGAAA 531
|||||||||| | ||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 398 GAGAGACTTG-A--AGGAGAAGAGGAGTGTTTGGACACAGGGCAATTAGTGTATCAGAAA 454
Query 532 GGGACAAGATTAGTAGGAGGAGGAGTAGGAGAAGTGAACAGCAGTTGGTGTGATTCGGTT 591
|||||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 455 GGGACAAGATTAGT-------CG-G-AGGAGAAGTGAACAGCAGTTGGTGTGATTCGGTT 505
Query 592 TCAGCTATGGCTGATAACAGTCAACATACTGACACTTCCACAGATATTGATACTGATGAC 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 TCAGCTATGGCTGATAACAGTCAACATACTGACACTTCCACAGATATTGATACTGATGAC 565
Query 652 AAGACTCAGTTGAATGGAGGTCATCAAGGGATGCTATTGGCTACAAATTGTTCAGATCAA 711
||||||||||| ||||||| ||||||||||||||| |||||||| ||||||||||| |||
Sbjct 566 AAGACTCAGTTAAATGGAGTTCATCAAGGGATGCTTTTGGCTACTAATTGTTCAGACCAA 625
Query 712 TCCAATGTGAAATCTAGTGATCAAAGGACACTTCGTCGACTTGCTCAGAACCGGGAGGCT 771
||||| ||||||||| |||| |||||||||||||| ||||| |||||||| |||||||||
Sbjct 626 TCCAAGGTGAAATCTTGTGAACAAAGGACACTTCGACGACTAGCTCAGAATCGGGAGGCT 685
Query 772 GCTAGGAAAAGTCGGTTGAGGAAAAAGGCATATGTTCAGCAACTTGAGAATAGTCGAATC 831
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 GCTAGGAAAAGTCGATTGAGGAAAAAGGCATATGTTCAGCAACTTGAGAATAGTCGAATA 745
Query 832 AGGCTT-GCACAGCTAGAGGAAGAGCTCAAAAGAGCTCGCCAACAGGGATCTTTGGTTGA 890
||| || || ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 746 AGG-TTAGCGCAGCTAGAGGAAGAGCTCAAAAGAGCTCGCCAACAGGGATCTTTGGTCGA 804
Query 891 AAGAGGAGTTTCAGCGGATCACACGCATTTGGCAGCCGGAAATGGTGTCTTTTCATTTGA 950
||| |||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||
Sbjct 805 AAGCGGAGTTTCAGCGGATCACACTCATTTGGCAGCTGGAAATGGTGCCTTTTCATTTGA 864
Query 951 ATTGGAATATACACGTTGGAAGGAAGAACATCAAA-GAATGATCAACGACTTAAGATCGG 1009
|||||||||||||||||||||||| || ||||||| | |||||||||||||||||||||
Sbjct 865 ATTGGAATATACACGTTGGAAGGAGGAGCATCAAAAGC-TGATCAACGACTTAAGATCGG 923
Query 1010 GTGTGAATTCGCAGTTAGGTGACAACGATCTACGCGTTCTAGTGGATGCTGTGATGAGTC 1069
||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 924 GTGTGAATTCGCAGTTAGGTGACAATGATCTACGAGTGCTAGTGGATGCTGTGATGAGTC 983
Query 1070 ACTATGATGAAATATTCAGGCTAAAGGGAATTGGTACTAAAGTTGACGTCTTTCATATGC 1129
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 984 ACTACGATGAAATATTCAGGCTAAAGGGAATTGGCACTAAAGTTGACGTCTTTCATATGC 1043
Query 1130 TCTCAGGCATGTGGAAGACACCTGCCGAGAGATTTTTCATGTGGTTAGGTGGATTTAGAT 1189
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1044 TCTCAGGCATGTGGAAGACGCCTGCTGAGAGATTTTTCATGTGGTTAGGTGGATTTAGAT 1103
Query 1190 CATCAGAGTTACTTAAGATATTGGGGAACCATGTGGATCCATTGACGGACCAGCAGTTGA 1249
|||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||
Sbjct 1104 CATCTGAGTTACTTAAGATATTGGGGAACCATGTTGATCCGTTGACGGATCAGCAGTTGA 1163
Query 1250 TAGGCATTTGCAACCTTCAGCAATCGTCTCAACAAGCAGAGGATGCATTGTCACAAGGCA 1309
||||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 1164 TAGGCATCTGCAACCTTCAACAGTCGTCTCAGCAAGCAGAGGATGCATTGTCACAAGGCA 1223
Query 1310 TGGAAGCTCTACAACAATCACTTCTCGAGACGCTTTCTTCTGCTTCAATGGGTCCAAACT 1369
|||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 1224 TGGAAGCTCTGCAACAATCGCTTCTAGAGACGCTTTCCTCTGCTTCAATGGGTCCTAACT 1283
Query 1370 CTTCAGCAAATGTTGCAGATTATATGGGTCATATGGCTATGGCTATGGGCAAACTTGGCA 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1284 CTTCAGCAAATGTTGCAGATTATATGGGTCATATGGCTATGGCTATGGGCAAACTTGGCA 1343
Query 1430 CTCTTGAAAACTTCCTTCGCCAGGCTGATTTATTGAGGCAACAAACTCTGCAACAGCTTC 1489
|||| |||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1344 CTCTCGAAAACTTTCTTCGCCAGGCTGATCTATTGAGGCAACAAACTCTACAACAGCTTC 1403
Query 1490 ACAGAATTCTCACCACACGACAAGCTGCTCGCGCCTTTTTGGTCATCCACGATTATATTT 1549
|||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1404 ACAGAATTCTTACCACACGACAAGCTGCTCGCGCCTTTTTGGTCATCCATGACTATATTT 1463
Query 1550 CTCGGCTTAGAGCACTTAGCTCTCTATGGTTAGCCAGACCTAGAGACTAAATAAAA 1605
||||||||||||||||||||||||||||||||||| | ||||| ||||||| ||||
Sbjct 1464 CTCGGCTTAGAGCACTTAGCTCTCTATGGTTAGCCCGGCCTAGGGACTAAAGAAAA 1519
Score = 108 bits (58), Expect = 2e-22
Identities = 65/68 (96%), Gaps = 1/68 (1%)
Strand=Plus/Plus
Query 1696 GCTCTTCTCTTTAGTGT-ATTAGATCATCTGTTTATTTAGTTGGTAGTGAACGTTACCAT 1754
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1537 GCTCTCCTCTTTAGTGTCTTTAGATCATCTGTTTATTTAGTTGGTAGTGAACGTTACCAT 1596
Query 1755 TCAGAATC 1762
||||||||
Sbjct 1597 TCAGAATC 1604
Score = 95.3 bits (51), Expect = 1e-18
Identities = 88/103 (85%), Gaps = 13/103 (13%)
Strand=Plus/Plus
Query 4 TTCTCTCTCTCACACACAATATAGTAATTTCGTATTTATTAATGATGAATCCTCCAGCCG 63
||||||||||| | ||||||||||||||||||||||||||||||||||| | |
Sbjct 1 TTCTCTCTCTCTCTCACAATATAGTAATTTCGTATTTATTAATGATGAA------A-C-- 51
Query 64 TACTGATTCGCCATCTTTTCACCTCTTTAATGAATTCTC-TCC 105
| ||||||||||||||||||||||||||||||||||| |||
Sbjct 52 T---GATTCGCCATCTTTTCACCTCTTTAATGAATTCTCCTCC 91
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66124665320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5