BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G68640.1 Length=1762 Score E Sequences producing significant alignments: (Bits) Value Ahg475990 jgi|Araly1|475990|fgenesh2_kg.2__1120__AT1G68640.1 2045 0.0 > Ahg475990 jgi|Araly1|475990|fgenesh2_kg.2__1120__AT1G68640.1 Length=1604 Score = 2045 bits (1107), Expect = 0.0 Identities = 1290/1376 (94%), Gaps = 22/1376 (2%) Strand=Plus/Plus Query 232 TCAACAACAATGCAGAGCAGCTTCAAAACCGTTCCTTTCACTCCTGATTTCTACTCTCAG 291 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 164 TCAACAACAATGCAGAGCAGCTTCAAAACCGTTCCTTTCAATCCTGATTTCTACTCTCAG 223 Query 292 TCTTCTTACTTCTTCAGAGGAGATAGTTGTCTTGAGGAGTTTCATCAACCAGTCAATGGT 351 || |||| ||||||||||||||||||||| ||||| ||||||||||||||||| |||||| Sbjct 224 TCCTCTTTCTTCTTCAGAGGAGATAGTTGCCTTGAAGAGTTTCATCAACCAGTTAATGGT 283 Query 352 TTTCACCATGAAGAAGCTATCGATTTAAGTCCAAATGTCACTATTGCTTCAGCTAACTTA 411 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 284 TTTCACCATGAAGAAGCTATCGATTTAAGTCCAAATGTCACTATTGCTTCAGCCAACTTA 343 Query 412 CACTACACGACGTTTGATACGGTTATGGATTgtggtggtggtggtggtggtggCTTGAGG 471 ||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 344 CACTACACGACGTTTGATACGGTTATGGA-----GT-GTGGTGGTGGTGGTGGCTTGAGA 397 Query 472 GAGAGACTTGAAGGAGGAGAAGAGGAGTGTTTGGACACAGGGCAACTAGTGTACCAGAAA 531 |||||||||| | ||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 398 GAGAGACTTG-A--AGGAGAAGAGGAGTGTTTGGACACAGGGCAATTAGTGTATCAGAAA 454 Query 532 GGGACAAGATTAGTAGGAGGAGGAGTAGGAGAAGTGAACAGCAGTTGGTGTGATTCGGTT 591 |||||||||||||| | | |||||||||||||||||||||||||||||||||| Sbjct 455 GGGACAAGATTAGT-------CG-G-AGGAGAAGTGAACAGCAGTTGGTGTGATTCGGTT 505 Query 592 TCAGCTATGGCTGATAACAGTCAACATACTGACACTTCCACAGATATTGATACTGATGAC 651 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 506 TCAGCTATGGCTGATAACAGTCAACATACTGACACTTCCACAGATATTGATACTGATGAC 565 Query 652 AAGACTCAGTTGAATGGAGGTCATCAAGGGATGCTATTGGCTACAAATTGTTCAGATCAA 711 ||||||||||| ||||||| ||||||||||||||| |||||||| ||||||||||| ||| Sbjct 566 AAGACTCAGTTAAATGGAGTTCATCAAGGGATGCTTTTGGCTACTAATTGTTCAGACCAA 625 Query 712 TCCAATGTGAAATCTAGTGATCAAAGGACACTTCGTCGACTTGCTCAGAACCGGGAGGCT 771 ||||| ||||||||| |||| |||||||||||||| ||||| |||||||| ||||||||| Sbjct 626 TCCAAGGTGAAATCTTGTGAACAAAGGACACTTCGACGACTAGCTCAGAATCGGGAGGCT 685 Query 772 GCTAGGAAAAGTCGGTTGAGGAAAAAGGCATATGTTCAGCAACTTGAGAATAGTCGAATC 831 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 686 GCTAGGAAAAGTCGATTGAGGAAAAAGGCATATGTTCAGCAACTTGAGAATAGTCGAATA 745 Query 832 AGGCTT-GCACAGCTAGAGGAAGAGCTCAAAAGAGCTCGCCAACAGGGATCTTTGGTTGA 890 ||| || || ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 746 AGG-TTAGCGCAGCTAGAGGAAGAGCTCAAAAGAGCTCGCCAACAGGGATCTTTGGTCGA 804 Query 891 AAGAGGAGTTTCAGCGGATCACACGCATTTGGCAGCCGGAAATGGTGTCTTTTCATTTGA 950 ||| |||||||||||||||||||| ||||||||||| |||||||||| |||||||||||| Sbjct 805 AAGCGGAGTTTCAGCGGATCACACTCATTTGGCAGCTGGAAATGGTGCCTTTTCATTTGA 864 Query 951 ATTGGAATATACACGTTGGAAGGAAGAACATCAAA-GAATGATCAACGACTTAAGATCGG 1009 |||||||||||||||||||||||| || ||||||| | ||||||||||||||||||||| Sbjct 865 ATTGGAATATACACGTTGGAAGGAGGAGCATCAAAAGC-TGATCAACGACTTAAGATCGG 923 Query 1010 GTGTGAATTCGCAGTTAGGTGACAACGATCTACGCGTTCTAGTGGATGCTGTGATGAGTC 1069 ||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||| Sbjct 924 GTGTGAATTCGCAGTTAGGTGACAATGATCTACGAGTGCTAGTGGATGCTGTGATGAGTC 983 Query 1070 ACTATGATGAAATATTCAGGCTAAAGGGAATTGGTACTAAAGTTGACGTCTTTCATATGC 1129 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 984 ACTACGATGAAATATTCAGGCTAAAGGGAATTGGCACTAAAGTTGACGTCTTTCATATGC 1043 Query 1130 TCTCAGGCATGTGGAAGACACCTGCCGAGAGATTTTTCATGTGGTTAGGTGGATTTAGAT 1189 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 1044 TCTCAGGCATGTGGAAGACGCCTGCTGAGAGATTTTTCATGTGGTTAGGTGGATTTAGAT 1103 Query 1190 CATCAGAGTTACTTAAGATATTGGGGAACCATGTGGATCCATTGACGGACCAGCAGTTGA 1249 |||| ||||||||||||||||||||||||||||| ||||| |||||||| |||||||||| Sbjct 1104 CATCTGAGTTACTTAAGATATTGGGGAACCATGTTGATCCGTTGACGGATCAGCAGTTGA 1163 Query 1250 TAGGCATTTGCAACCTTCAGCAATCGTCTCAACAAGCAGAGGATGCATTGTCACAAGGCA 1309 ||||||| ||||||||||| || |||||||| |||||||||||||||||||||||||||| Sbjct 1164 TAGGCATCTGCAACCTTCAACAGTCGTCTCAGCAAGCAGAGGATGCATTGTCACAAGGCA 1223 Query 1310 TGGAAGCTCTACAACAATCACTTCTCGAGACGCTTTCTTCTGCTTCAATGGGTCCAAACT 1369 |||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||| |||| Sbjct 1224 TGGAAGCTCTGCAACAATCGCTTCTAGAGACGCTTTCCTCTGCTTCAATGGGTCCTAACT 1283 Query 1370 CTTCAGCAAATGTTGCAGATTATATGGGTCATATGGCTATGGCTATGGGCAAACTTGGCA 1429 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1284 CTTCAGCAAATGTTGCAGATTATATGGGTCATATGGCTATGGCTATGGGCAAACTTGGCA 1343 Query 1430 CTCTTGAAAACTTCCTTCGCCAGGCTGATTTATTGAGGCAACAAACTCTGCAACAGCTTC 1489 |||| |||||||| ||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct 1344 CTCTCGAAAACTTTCTTCGCCAGGCTGATCTATTGAGGCAACAAACTCTACAACAGCTTC 1403 Query 1490 ACAGAATTCTCACCACACGACAAGCTGCTCGCGCCTTTTTGGTCATCCACGATTATATTT 1549 |||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 1404 ACAGAATTCTTACCACACGACAAGCTGCTCGCGCCTTTTTGGTCATCCATGACTATATTT 1463 Query 1550 CTCGGCTTAGAGCACTTAGCTCTCTATGGTTAGCCAGACCTAGAGACTAAATAAAA 1605 ||||||||||||||||||||||||||||||||||| | ||||| ||||||| |||| Sbjct 1464 CTCGGCTTAGAGCACTTAGCTCTCTATGGTTAGCCCGGCCTAGGGACTAAAGAAAA 1519 Score = 108 bits (58), Expect = 2e-22 Identities = 65/68 (96%), Gaps = 1/68 (1%) Strand=Plus/Plus Query 1696 GCTCTTCTCTTTAGTGT-ATTAGATCATCTGTTTATTTAGTTGGTAGTGAACGTTACCAT 1754 ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1537 GCTCTCCTCTTTAGTGTCTTTAGATCATCTGTTTATTTAGTTGGTAGTGAACGTTACCAT 1596 Query 1755 TCAGAATC 1762 |||||||| Sbjct 1597 TCAGAATC 1604 Score = 95.3 bits (51), Expect = 1e-18 Identities = 88/103 (85%), Gaps = 13/103 (13%) Strand=Plus/Plus Query 4 TTCTCTCTCTCACACACAATATAGTAATTTCGTATTTATTAATGATGAATCCTCCAGCCG 63 ||||||||||| | ||||||||||||||||||||||||||||||||||| | | Sbjct 1 TTCTCTCTCTCTCTCACAATATAGTAATTTCGTATTTATTAATGATGAA------A-C-- 51 Query 64 TACTGATTCGCCATCTTTTCACCTCTTTAATGAATTCTC-TCC 105 | ||||||||||||||||||||||||||||||||||| ||| Sbjct 52 T---GATTCGCCATCTTTTCACCTCTTTAATGAATTCTCCTCC 91 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66124665320 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5