BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68650.1
Length=962
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475991 jgi|Araly1|475991|fgenesh2_kg.2__1121__AT1G68650.1 1509 0.0
> Ahg475991 jgi|Araly1|475991|fgenesh2_kg.2__1121__AT1G68650.1
Length=942
Score = 1509 bits (817), Expect = 0.0
Identities = 903/944 (96%), Gaps = 8/944 (1%)
Strand=Plus/Plus
Query 16 AAAAAACATTCACCTTCTCTTACGCGACTCTCGCCGGAAACAGATCGCTCCGCCGTGAAC 75
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 AAAAAACATTCACCTTCTCTTACGCGACTCTCGCCGGAAACAGATCGCTCCGCCGTGATC 60
Query 76 TCGGAAGCCATGGGGTCACTTTTGCAGGGTTTTACTAAATCACTCGCCATGACTTTCCTC 135
|||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCGGAAGCAATGGGCTCTCTTTTGCAGGGTTTTACTAAATCACTCGCCATGACTTTCCTC 120
Query 136 TCCGAGATTGGTGACAAAACGTTCTTCGCTGCTGCTATTTTGGCGATGCGGTATCCTAGG 195
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 121 TCCGAGATTGGTGACAAAACGTTCTTCGCTGCTGCTATTTTGGCAATGCGTTATCCTAGG 180
Query 196 AGGCTTGTATTAGCTGGTTGTTTATCAGCTTTGATTGTCATGACTATATTATCTGCTACA 255
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 181 AGACTTGTATTAGCTGGTTGTTTATCGGCTTTGATTGTCATGACTATATTATCTACTACA 240
Query 256 CTTGGTTGGGCTGCTCCAAATCTGATCTCTCGGAAATGGACTCATCATATAACAACATTC 315
|| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 CTCGGTTGGGCTGCTCCTAATCTGATCTCTCGTAAATGGACTCATCATATAACAACATTG 300
Query 316 TTGTTCTTTGGCTTTGGGTTATGGTCTTTGTGGGATGGTTTTAAAGAAGGAGGAGGTTCT 375
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 301 TTGTTCTTTGGCTTCGGGTTATGGTCTTTATGGGACGGTTTTAAAGAAGGAGGGGGTTCT 360
Query 376 GAAGAATTGGCAGAAGTTGAAGCAGAACTGGATTCTGATTTGAAGAAGACTAATGATCAA 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAAGAATTGGCAGAAGTTGAAGCAGAACTGGATTCTGATTTGAAGAAGACTAATGATCAA 420
Query 436 TC---GAAA-A-A-CAGTAAGATTGAAGATGAACAGAAAAAGCAGAAAAGACCATTCCTT 489
|| ||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCAAAAAAAGACAGCAGTAAGATTGAAGATGAACAGAAAAAGCAGAAAAGACCATTCCTT 480
Query 490 ACTGCATTCTTCTCTCCCATTTTTCTCAAGGCGTTTTCGATTAACTTCTTTGGTGAATGG 549
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 481 ACTGCTTTCTTCTCTCCCATTTTTCTCAAGGCGTTTTCAATTAACTTCTTTGGTGAGTGG 540
Query 550 GGTGACAAGAGTCAGCTTGCGACCATTGGTTTGGCTGCAGATGAAAATCCACTCGGCGTG 609
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 541 GGTGACAAGAGTCAGCTTGCGACTATTGGTTTGGCTGCAGATGAAAATCCACTTGGCGTG 600
Query 610 GTCCTTGGCGGAATTGTGGCACAAACATTGTGTACCACAGCTGCTGTGCTTGGTGGCAAG 669
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTCCTTGGTGGAATTTTGGCACAAACATTGTGTACCACAGCTGCTGTGCTTGGTGGCAAG 660
Query 670 AGCTTAGCATCTCAAATATCCGAACGAATTGTGGCTCTTTCCGGTGGAATGCTTTTCATT 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGCTTAGCATCTCAAATATCCGAACGAATTGTGGCTCTTTCCGGTGGAATGCTTTTCATT 720
Query 730 ATCTTCGGCATTCAGTCGCTTCTTACTCCGGTTGATGCTTGATACATCTATATGGTATCC 789
|| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATTTTCGGCATCCAGTCACTTCTTACTCCGGTTGATGCTTGATACATCTATATGGTATCC 780
Query 790 CATCAATGTCTTGAAACTGCAGGTTTCTTGGGTTTGAATGCTTTTTTGGGCGAGATGAAA 849
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 781 CCTCAATGTCTTGAAACTGCAGGTTTCTTGGGTTTGAATGCTTTTTTGG-CGAGATGAAA 839
Query 850 CCGAAACACGTCACTCCCTTACAATTGCTTAGATACATTTACATTAGTGATTACAGAATC 909
| |||||| |||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 840 CTGAAACATGTCACTCCCTTACAATTGCTTAGATACATTCAC-TTAGTGATTACAGAATC 898
Query 910 AGAAAGATTCATCTGTAACACCATTTGACTTCAATAAAGTTTTG 953
|||||||||||||||||||||||||||| |||||||||||||||
Sbjct 899 AGAAAGATTCATCTGTAACACCATTTGAATTCAATAAAGTTTTG 942
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35721173229
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5