BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68660.1
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926152 jgi|Araly1|926152|scaffold_201713.1 848 0.0
> Ahg926152 jgi|Araly1|926152|scaffold_201713.1
Length=522
Score = 848 bits (459), Expect = 0.0
Identities = 502/523 (96%), Gaps = 2/523 (0%)
Strand=Plus/Plus
Query 58 CTGAGAAGCATCCACTCGACAATGGAGACTGCGATTTGTGGGAGATTAGCTCTCGCACCA 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTGAGAAGCATCCACTCGACAATGGAGACTGCGATTTGTGGGAGATTAGCTCTCGCACCA 60
Query 118 TCCTCTCTCTTCAATTCTAAATCAGGGGACAAACATTTAGTCTCAAAAGGACCATGTGTG 177
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCCTCTCTCTTCAATTCCAAATCAGGGGACAAACATTTAGTCTCAAAAGGACCATGTGTG 120
Query 178 AATCGTAGCATTCTCATGACCTTGTCTACAT-CTGCTGCATTGGGTAAAGGAGGTGGTGT 236
|||||| | ||||||||||||||||||||| | |||||||| |||||||||||||||||
Sbjct 121 AATCGTGGTGTTCTCATGACCTTGTCTACATAC-GCTGCATTAGGTAAAGGAGGTGGTGT 179
Query 237 CTTAGACAAACCAATTATAGAGAAAACCACTCCTGGTCGTGAATCCGAGTTTGATTTAAG 296
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 180 CTTGGACAAACCAATTATAGAGAAAACCACTCCTGGTCGTGAATCCGAGTTTGATTTGAG 239
Query 297 GAAATCAAAGAAGATAGCTCCACCTTACAGGGTGATACTACACAATGACAACTTCAACAA 356
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 GAAATCAAAGAAGATGGCTCCACCTTACAGGGTGATACTACACAACGACAACTTCAACAA 299
Query 357 GAGGGAATATGTGGTTCAGGTGTTGATGAAGGTAATACCCGGCATGACTGTAGACAACGC 416
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 300 GAGGGAATATGTGGTTCAGGTGTTGATGAAGGTAATACCAGGCATGACTGTAGACAATGC 359
Query 417 GGTTAACATTATGCAAGAAGCTCATATCAACGGTTTGGCAGTTGTGATTGTTTGTGCTCA 476
||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct 360 GGTTAACATTATGCAAGAAGCCCACATCAACGGTTTGGCAGTTGTGATTGTCTGTGCTCA 419
Query 477 GGCTGATGCAGAGCAACACTGTATGCAGCTGCGCGGTAACGGCCTTCTCAGTTCTGTTGA 536
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 420 GGCCGATGCAGAGCAACACTGTATGCAGCTGCGGGGTAACGGCCTTCTTAGTTCTGTCGA 479
Query 537 ACCTGATGGTGGAGGCTGCTGAAACTAATTAAACTCAGTATAG 579
|||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 ACCTGATGGTGGAGGCTGCTGATACTAATTAAACTCAGTATAG 522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28210958580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5