BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68670.1
Length=1583
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475994 jgi|Araly1|475994|fgenesh2_kg.2__1124__AT1G68670.1 1661 0.0
Ahg912452 jgi|Araly1|912452|Al_scaffold_0001_2706 193 4e-48
Ahg920209 jgi|Araly1|920209|scaffold_101490.1 161 1e-38
Ahg343166 jgi|Araly1|343166|fgenesh1_pg.C_scaffold_3002929 106 6e-22
> Ahg475994 jgi|Araly1|475994|fgenesh2_kg.2__1124__AT1G68670.1
Length=1432
Score = 1661 bits (899), Expect = 0.0
Identities = 1163/1282 (91%), Gaps = 52/1282 (4%)
Strand=Plus/Plus
Query 130 AAACCTAAAC-C-ctctctc--tctctctctctctctctatctctTGAAAAATCAACAAA 185
||||| |||| | ||||||| ||||| ||||| |||||||||||| |||| | ||||
Sbjct 36 AAACCAAAACTCTCTCTCTCTATCTCTATCTCTATCTCTATCTCTT--CAAAT-ATCAAA 92
Query 186 ACATTGGAATCAATTTCTCTATGTTTTGATTCTATTTTAAAGATCCAATATTCTTTCTCC 245
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 93 ACATTGGAATCAATTTCTCTATGTTTTGATTCCATTTTAAAGATCCAATATTCCTTCTCC 152
Query 246 A-TTG-AGATTAAGCTTCTTTC-TCGCTGTCGTCTCTCTATAGATCTTGGTTCTTAGTCC 302
| ||| | | |||||||||||| |||||||||||||||| ||||||||||||||| ||||
Sbjct 153 ATTTGAAAAGTAAGCTTCTTTCTTCGCTGTCGTCTCTCTGTAGATCTTGGTTCTTGGTCC 212
Query 303 CTTTTGAATAATAATGATGGTGGAGATGGATTACGCTAAGAAAATGCAGAAATGTCATGA 362
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 CTTTAGAATAATAATGATGGTGGAGATGGATTACGCTAAGAAAATGCAGAAATGTCATGA 272
Query 363 ATACGTTGAAGCACTTGAAGAAGAACAGAAGAAAATCCAAGTCTTTCAACGCGAGCTTCC 422
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 273 ATACGTTGAAGCACTTGAAGAAGAACAAAAGAAAATCCAAGTCTTTCAACGCGAGCTTCC 332
Query 423 TTTATGTTTAGAGCTTGTCACTCAAGCGATCGAAGCTTGTCGGAAGGAGTTATCTGGTAC 482
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 333 TTTATGTTTAGAGCTTGTTACTCAAGCGATCGAAGCTTGTCGGAAGGAGTTATCTGGT-- 390
Query 483 GACGACAACTACATCAGAACAGTGTTCAGAACAGACCACAAGTGTTTGTGGTGGTCCTGT 542
|||||||| ||||||||||||||||| |||||||| | |||||||||||||||||||||
Sbjct 391 -ACGACAACAACATCAGAACAGTGTTCGGAACAGACAATAAGTGTTTGTGGTGGTCCTGT 449
Query 543 CTTTGAAGAGTTTATTCCTATCAAGAAAATTAGTTCCTTGTGTgaagaagtacaagaaga 602
||||||||||||||||||||||||| || || | | || | | || |||||
Sbjct 450 CTTTGAAGAGTTTATTCCTATCAAG--AA-GAGGT-C--GT-T---G-TGT----GAAGA 494
Query 603 agaagaagaagaTGGTGAACATGAATCTTCTCCAGAACTT-----G--T-G-AATAATAA 653
|||||||||||||||||||||||||||||||||||| ||| | | | ||||||||
Sbjct 495 AGAAGAAGAAGATGGTGAACATGAATCTTCTCCAGAGCTTGAACAGATTGGTAATAATAA 554
Query 654 GAAATCAGATTGGCTTAGATCTGTTCAGCTATGGAAT-CATTCACCGGATCTAAATCCAA 712
|||||| ||||||||||||||||||||| |||||| | || ||||| ||||| || || |
Sbjct 555 GAAATCTGATTGGCTTAGATCTGTTCAGTTATGGACTCCA-TCACCAGATCTTAACCCGA 613
Query 713 AAGAGGAGCGTGTAGCTAAGAAAGCGAAAGTGGTGGAGGTGAAACCAAAAAGCGGTGCGT 772
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 614 AAGAGGAGCGTGTAGTTAAGAAAGCGAAAGTGGTGGAGGTGACACCAAAAAGCGGTGCGT 673
Query 773 TTCAGCCGTTTC-AAA--AG------CGCGTTTTGGAGACTGATTTGCAACCGGCGGTGA 823
|||||||||||| ||| || ||||||||||||||||||||||||||||||||||
Sbjct 674 TTCAGCCGTTTCAAAAGGAGAAAAAACGCGTTTTGGAGACTGATTTGCAACCGGCGGTGA 733
Query 824 AAGTAGCTAGTTCGATGCCAGCGACGACGACGAGTTCTACGACGGAAACTTGTGGTGGTA 883
||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||| ||
Sbjct 734 AAGTAGCTAGTTCGACGCCGGCGACGACGACGAGTTCTACGACGGAAACTGGTGGTGCTA 793
Query 884 AAAGTGATTTGATTAAAGCT-GGAGATGAGGAAAGACGGATAGAGCAGCAGCAATCGCAG 942
||||||| ||| |||||| | ||||| ||| | |||| ||||||||||||||||||||||
Sbjct 794 AAAGTGAGTTGGTTAAAG-TGGGAGAGGAGCAGAGACAGATAGAGCAGCAGCAATCGCAG 852
Query 943 TCGCATACGCATAGAAAACAAAGGCGGTGCTGGTCGCCGGAATTACACCGTCGATTCCTA 1002
||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||| ||
Sbjct 853 TCGCAAACGCATAGAAAACAAAGGCGGTGCTGGTCGCCGGAGTTACACCGGCGATTCTTA 912
Query 1003 AACGCGCTTCAGCAGCTTGGAGGATCTCATGTTGCTACACC-AAAGCAAATCAGGGATCA 1061
|||||||||||||||||||||||||||||||||||||| || ||| || || || |||||
Sbjct 913 AACGCGCTTCAGCAGCTTGGAGGATCTCATGTTGCTACGCCTAAA-CAGATTAGAGATCA 971
Query 1062 CATGAAGGTTGATGGATTAACAAACGACGAAGTTAAAAGCCATTTACAGAAATATAGACT 1121
||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 972 TATGAAAGTCGATGGATTAACAAATGACGAAGTTAAAAGCCATTTACAGAAATATAGACT 1031
Query 1122 TCACACAAGAAGGCCAGCAGCAACATCCGTGGCGGCACAAAGTACCGGGAATCAGCAACA 1181
||||||||||||||||||||||||||| ||||||||||| || | ||| || | ||||||
Sbjct 1032 TCACACAAGAAGGCCAGCAGCAACATCGGTGGCGGCACAGAGCAACGGAAACCCGCAACA 1091
Query 1182 ACCACAATTTGTGGTGGTTGGAGGCATATGGGTACCATCGTCACAAGATTTTCCACCACC 1241
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1092 ACCGCAATTTGTGGTGGTTGGAGGCATATGGGTACCATCGCCACAAGATTTTCCACCACC 1151
Query 1242 GTCCGATGTAGCCAACAAGGGTGGTGTATATGCTCCGGTTGCGGTGGCGCAATCTCCAAA 1301
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 GTCCGATGTAGCCAACAACGGTGGTGTATATGCTCCGGTTGCGGTGGCGCAATCTCCAAA 1211
Query 1302 ACGTTCGTTGGAGAGAAGTTGCAACTCGCCGGCGGCATCTTCCTCTACAAATACAAATAC 1361
||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1212 ACGTTCGGTGGAGAGAAGTTGTAACTCGCCGGCAGCATCTTCCTCTACAAATACAAATAC 1271
Query 1362 TTCTACTCCTGTGTCATAATCT 1383
|||||||||||| |||||||||
Sbjct 1272 TTCTACTCCTGTATCATAATCT 1293
Score = 178 bits (96), Expect = 1e-43
Identities = 129/144 (90%), Gaps = 6/144 (4%)
Strand=Plus/Plus
Query 1440 TTATGTGAATGTAAGAAATATTTTCGTCCGTTTTTGTTTGTAACCAAGAAATGTTATTTC 1499
|||||||| ||||| ||| | |||||||| ||||||||||||| |||||||||||||||
Sbjct 1293 TTATGTGAGTGTAAAAAAAAAATTCGTCCG-TTTTGTTTGTAACAAAGAAATGTTATTTC 1351
Query 1500 CTCGGTTGGAAATTTTGAATAAAGTAGACGAATGCTACTATGTAGTATATACACGAGA-- 1557
|| |||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1352 CTAGGTTGGAAATTTTGAATAAAGTAGACGAATGC-A--ATGTAGTATATACACGAGAGA 1408
Query 1558 TAAGTGAAGACTCTTTGTTTTTCT 1581
||||| |||| |||||||||||||
Sbjct 1409 TAAGTAAAGAATCTTTGTTTTTCT 1432
Score = 52.8 bits (28), Expect = 7e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 76 TTTAGGTACGCGACGGCCCGACCTCGAT 103
||||||||||||||||||||||||||||
Sbjct 1 TTTAGGTACGCGACGGCCCGACCTCGAT 28
> Ahg912452 jgi|Araly1|912452|Al_scaffold_0001_2706
Length=1023
Score = 193 bits (104), Expect = 4e-48
Identities = 166/196 (85%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 946 CATACGCATAGAAAACAAAGGCGGTGCTGGTCGCCGGAATTACACCGTCGATTCCTAAAC 1005
||| || |||| || ||||| || ||||||||| |||| |||||||| ||||| | ||
Sbjct 613 CATTCGAATAGGAAGCAAAGACGTTGCTGGTCGGCGGAGTTACACCGGAGATTCTTGCAC 672
Query 1006 GCGCTTCAGCAGCTTGGAGGATCTCATGTTGCTACACC-AAAGCAAATCAGGGATCACAT 1064
|||||||| || ||||| ||||| |||||||||||||| ||| || || || |||| |||
Sbjct 673 GCGCTTCAACAACTTGGTGGATCACATGTTGCTACACCTAAA-CAGATTAGAGATCTCAT 731
Query 1065 GAAGGTTGATGGATTAACAAACGACGAAGTTAAAAGCCATTTACAGAAATATAGACTT-C 1123
|||||| ||||| ||||| || ||||||||||||||||||||||||||||||||| || |
Sbjct 732 GAAGGTCGATGGTTTAACTAATGACGAAGTTAAAAGCCATTTACAGAAATATAGA-TTGC 790
Query 1124 ACACAAGAAGGCCAGC 1139
|||||||||| |||||
Sbjct 791 ACACAAGAAGACCAGC 806
> Ahg920209 jgi|Araly1|920209|scaffold_101490.1
Length=1081
Score = 161 bits (87), Expect = 1e-38
Identities = 153/185 (83%), Gaps = 4/185 (2%)
Strand=Plus/Plus
Query 955 AGAAAACAAAGGCGGTGCTGGTCGCCGGAATTACACCGTCGATTCCTAAACGCGCTTCAG 1014
||||| ||||| |||| ||||| || | || || | || ||| | ||||| |||||
Sbjct 564 AGAAAGCAAAGAAGGTGTTGGTCATCGCAGTTGCATAGACGCTTCTTGAACGCTCTTCAA 623
Query 1015 CAGCTT-GGAGGATCTCATGTTGCTACACCAAAGCAAATCAGGGA-TCACATGAAGGTTG 1072
|| ||| || ||| ||||||| ||||| ||||||||||||||||| | | ||||| ||||
Sbjct 624 CA-CTTAGGTGGACCTCATGTAGCTACGCCAAAGCAAATCAGGGAGTTA-ATGAAAGTTG 681
Query 1073 ATGGATTAACAAACGACGAAGTTAAAAGCCATTTACAGAAATATAGACTTCACACAAGAA 1132
|||||||||| || || |||||||||||||||||||||||||||||||| || |||||||
Sbjct 682 ATGGATTAACCAATGATGAAGTTAAAAGCCATTTACAGAAATATAGACTGCATACAAGAA 741
Query 1133 GGCCA 1137
|||||
Sbjct 742 GGCCA 746
> Ahg343166 jgi|Araly1|343166|fgenesh1_pg.C_scaffold_3002929
Length=477
Score = 106 bits (57), Expect = 6e-22
Identities = 98/116 (84%), Gaps = 10/116 (9%)
Strand=Plus/Plus
Query 1032 TGTTGCTACACC-AAAGCAAATCAGGGATCACATGAAGGT-----T-GATGGATTAACAA 1084
|||||||||||| ||| || || || |||| ||||||||| | ||||| ||||| |
Sbjct 132 TGTTGCTACACCTAAA-CAGATTAGAGATCTCATGAAGGTGAAGGTCGATGGTTTAACTA 190
Query 1085 ACGACGAAGTTAAAAGCCATTTACAGAAATATAGACTT-CACACAAGAAGGCCAGC 1139
| ||||||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 191 ATGACGAAGTTAAAAGCCATTTACAGAAATATAGA-TTGCACACAAGAAGACCAGC 245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59306511465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5