BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G68680.1

Length=651
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg315886 jgi|Araly1|315886|fgenesh1_pm.C_scaffold_2000919           361    4e-99


> Ahg315886 jgi|Araly1|315886|fgenesh1_pm.C_scaffold_2000919
Length=228

 Score =  361 bits (195),  Expect = 4e-99
 Identities = 217/228 (95%), Gaps = 0/228 (0%)
 Strand=Plus/Plus

Query  122  ATGGCGTCGTCAAGCGATCCTTCAAAACCAGTAATGGAGAGGAAGAAGAAAGGAGCTCCG  181
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCGTCGTCAAGCGATACTTCAAAACCAGTAATGGAGAGGAAGAAGAAAGGAGCTCCG  60

Query  182  ATCAAATTCTTAGTACCTCTCATCTACGCACCTGCGCTTCCTTTGATTCGGTTGTCTTTA  241
            ||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||| 
Sbjct  61   ATCAAATTCTTGGTCCCTCTCATCTACGCGCCTGCTCTTCCTTTGATTCGGTTGTCTTTG  120

Query  242  AGGCATAAGCCAGTTCTAAGAGATCGTCTCTTCGGTCTTGTCCTCGTCGGTGCTTTTGCT  301
            || ||||| |||||||| ||||| |||||||||||||||||||||| |||||||||||||
Sbjct  121  AGACATAAACCAGTTCTCAGAGACCGTCTCTTCGGTCTTGTCCTCGCCGGTGCTTTTGCT  180

Query  302  CATGGCTTCTATCTTGTAACGGATATATATGATGCAGAGAGCAAATGA  349
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  CATGGCTTCTATCTTGTAACGGATATATATGATGCAGAGAGCAAATGA  228



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23864946042


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5