BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G68680.1 Length=651 Score E Sequences producing significant alignments: (Bits) Value Ahg315886 jgi|Araly1|315886|fgenesh1_pm.C_scaffold_2000919 361 4e-99 > Ahg315886 jgi|Araly1|315886|fgenesh1_pm.C_scaffold_2000919 Length=228 Score = 361 bits (195), Expect = 4e-99 Identities = 217/228 (95%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 122 ATGGCGTCGTCAAGCGATCCTTCAAAACCAGTAATGGAGAGGAAGAAGAAAGGAGCTCCG 181 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCGTCGTCAAGCGATACTTCAAAACCAGTAATGGAGAGGAAGAAGAAAGGAGCTCCG 60 Query 182 ATCAAATTCTTAGTACCTCTCATCTACGCACCTGCGCTTCCTTTGATTCGGTTGTCTTTA 241 ||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 61 ATCAAATTCTTGGTCCCTCTCATCTACGCGCCTGCTCTTCCTTTGATTCGGTTGTCTTTG 120 Query 242 AGGCATAAGCCAGTTCTAAGAGATCGTCTCTTCGGTCTTGTCCTCGTCGGTGCTTTTGCT 301 || ||||| |||||||| ||||| |||||||||||||||||||||| ||||||||||||| Sbjct 121 AGACATAAACCAGTTCTCAGAGACCGTCTCTTCGGTCTTGTCCTCGCCGGTGCTTTTGCT 180 Query 302 CATGGCTTCTATCTTGTAACGGATATATATGATGCAGAGAGCAAATGA 349 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CATGGCTTCTATCTTGTAACGGATATATATGATGCAGAGAGCAAATGA 228 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23864946042 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5