BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68690.1
Length=3050
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926155 jgi|Araly1|926155|scaffold_201716.1 1777 0.0
Ahg472802 jgi|Araly1|472802|fgenesh2_kg.1__2756__AT1G26150.1 1022 0.0
> Ahg926155 jgi|Araly1|926155|scaffold_201716.1
Length=1492
Score = 1777 bits (962), Expect = 0.0
Identities = 1127/1203 (94%), Gaps = 26/1203 (2%)
Strand=Plus/Plus
Query 1333 GTTCTAACAATCCATCTCAAAACAACCCTACTCTTAGACCTCCTCTTGAT-GCTCCAAAT 1391
||||| | |||||| | |||||||||||||||||||||||| | | |||| ||| |||||
Sbjct 268 GTTCTGATAATCCACCCCAAAACAACCCTACTCTTAGACCT-C-C-TGATAGCT-CAAAT 323
Query 1392 TCTACTAATAATAGTGGAATTGGTACTGGTGCTGTTGTTGGTATCAGTGTAGCAGTAGCA 1451
||||||||| ||| |||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 324 TCTACTAATGGTAGCGGAATTGGTACTGGGGCTGTTGTTGGTATCAGTGTGGCAGTGGCA 383
Query 1452 CTTGTGGTCTTCACTCTTTTTGGTATCTTTGTCTGGTGCTTGAGGAA-ACGAGAAAAACG 1510
|||||||| ||||||||| ||||||| |||||||||||| ||| ||| ||||||||||||
Sbjct 384 CTTGTGGTGTTCACTCTTATTGGTATTTTTGTCTGGTGCGTGA-GAAGACGAGAAAAACG 442
Query 1511 CCTTTCAGCTGTTAGTGGTGGCGATGTTACACCATCACCAATGAGCTCTACCGCAAGATC 1570
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 443 ACTTTCAGCTGTTAGTGGTGGCGATGTTACGCCATCGCCAATGAGCTCTACCGCAAGATC 502
Query 1571 AGATTCAGCATTTTTTAGGATGCAGTCATCTGCACCTGTTGGAGCAAG-CAAGCGTTCGG 1629
||||||||| ||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 503 AGATTCAGCTTTTTTTAGGATGCAGTCATCTGCACCTGTTGTAG-GAGAAAAGCGTTCGG 561
Query 1630 GCAG---T------TA----T--CAATCACAATCCGGTGGCTTAGGCAATTCGAAAGCAT 1674
|||| | || | ||||||||||| |||||||||||||||||||||||||
Sbjct 562 GCAGTCATCAAACATATTTCTCACAATCACAATCTGGTGGCTTAGGCAATTCGAAAGCAT 621
Query 1675 TGTTTTCCTATGAAGAACTTGTGAAGGCAACAAATGGTTTTTCACAAGAAAATCTATTAG 1734
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 TGTTTTCCTACGAAGAACTTGTGAAGGCAACAAATGGTTTTTCACAAGAAAATCTATTAG 681
Query 1735 GTGAAGGTGGATTTGGTTGTGTATATAAAGGGATATTACCTGATGGGAGAGTAGTTGCTG 1794
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 682 GTGAAGGAGGATTTGGTTGTGTATATAAAGGGATATTACCGGATGGGAGAGTAGTTGCTG 741
Query 1795 TGAAACAACTAAAGATCGGTGGAGGACAAGGTGACAGGGAGTTTAAAGCCGAAGTTGAAA 1854
| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 742 TCAAACAACTAAAGATCGGTGGAGGACAAGGTGACCGGGAGTTCAAAGCCGAAGTTGAAA 801
Query 1855 CTCTTAGCAGAATTCATCACCGCCATTTGGTTTCAATCGTGGGACATTGTATCTCTGGTG 1914
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 CTCTTAGTAGAATTCATCACCGCCATTTGGTTTCAATCGTGGGACATTGTATCTCTGGTG 861
Query 1915 ACCGTAGATTGCTTATCTATGATTATGTTTCTAACAATGACCTTTACTTCCACCTTCATG 1974
|||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 862 ACCGCAGATTACTTATCTATGATTATGTCTCTAACAATGACCTTTACTTCCACCTTCATG 921
Query 1975 GAGAAAAATCTGTTCTAGACTGGGCAACACGTGTTAAAATTGCGGCTGGGGCAGCTCGTG 2034
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 922 GAGAAAAATCTGTTCTGGACTGGGCAACACGTGTTAAAATTGCGGCTGGGGCGGCTCGTG 981
Query 2035 GACTAGCTTATCTTCATGAAGATTGTCATCCGCGTATCATTCACAGGGACATCAAGTCGT 2094
||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 982 GACTAGCTTATCTCCATGAAGATTGTCACCCGCGTATCATTCACAGGGACATTAAGTCGT 1041
Query 2095 CTAACATTCTTTTAGAGGACAACTTTGATGCTCGGGTTTCTGACTTTGGCCTTGCAAGAT 2154
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1042 CTAACATTCTTTTAGAGGACAACTTTGATGCTCGGGTCTCTGACTTTGGTCTTGCAAGAT 1101
Query 2155 TAGCTCTTGATTGTAACACTCATATCACCACACGGGTCATCGGAACATTTGGCTATATGG 2214
||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 1102 TAGCTCTTGATTGTAACACTCATATCACCACACGGGTTATCGGAACGTTTGGCTACATGG 1161
Query 2215 CTCCTGAATATGCATCAAGTGGAAAATTAACAGAGAAATCAGATGTATTCTCCTTTGGGG 2274
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1162 CTCCTGAATATGCATCAAGTGGAAAATTAACAGAGAAATCAGATGTATTCTCCTTTGGTG 1221
Query 2275 TTGTTCTGCTGGAGTTAATCACTGGACGTAAACCGGTGGATACATCGCAACCACTGGGAG 2334
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1222 TTGTTCTGCTCGAGTTAATCACTGGACGTAAACCGGTGGATACATCGCAACCACTGGGAG 1281
Query 2335 ATGAGAGCCTTGTTGAATGGGCCCGGCCTTTGATAAGTCATGCCATAGAAACCGAGGAAT 2394
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1282 ACGAGAGCCTTGTTGAATGGGCCCGGCCTCTGATAAGTCATGCCATAGAAACCGAGGAAT 1341
Query 2395 TTGATTCTTTAGCAGATCCTAAGCTTG-GAGGAAACTATGTAGAATCTGAAATGTTTAGA 2453
||||||||||||||||||| ||||||| | ||||||||||| ||||||||||||||||||
Sbjct 1342 TTGATTCTTTAGCAGATCCCAAGCTTGCG-GGAAACTATGTCGAATCTGAAATGTTTAGA 1400
Query 2454 ATGATTGAAGCAGCAGGAGCCTGCGTGCGGCATTTAGCTACCAAGAGACCTCGGATGGGA 2513
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1401 ATGATTGAAGCAGCGGGAGCCTGCGTGCGCCATTTAGCTACCAAGAGACCTCGGATGGGA 1460
Query 2514 CAA 2516
|||
Sbjct 1461 CAA 1463
Score = 298 bits (161), Expect = 2e-79
Identities = 240/275 (87%), Gaps = 18/275 (7%)
Strand=Plus/Plus
Query 562 TTGATTTGTTGATCGGAATTGAGATGGCAACAACACCGGTTCAACCTCCGGTTTCAAATT 621
|||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1 TTGATTTGGTGATCGGAATTGAGATGGCAACGACACCGGTACAACCTCCGGTTTCAAATT 60
Query 622 CTCCACCGGTGACTTCGCCGCCGCCGC---------C-ACTG-AA-TAA---TGCTACTT 666
||||||||||| ||||||||||||| | | ||| || ||| |||| |||
Sbjct 61 CTCCACCGGTGGCTTCGCCGCCGCCACTGAATAATTCTACTCCAAGTAACAATGCTTCTT 120
Query 667 CTCCGGCTACACCACCACCAGTAACATCGCCGCTACCTCCGTCAGCACCTCCACCAAATA 726
||||||||||||||||||| || ||||| ||||| |||||||||||||| ||||||||||
Sbjct 121 CTCCGGCTACACCACCACCGGTGACATCTCCGCTTCCTCCGTCAGCACCGCCACCAAATA 180
Query 727 GAGctcctcctcctcctcctccggtgactacctcaccaccaccagttgctaatggagctc 786
||| | |||||||||||||||||| |||| |||||||||||||||| | ||||||||||
Sbjct 181 GAG-T--TCCTCCTCCTCCTCCGGTTACTATCTCACCACCACCAGTTACAAATGGAGCTC 237
Query 787 ctcctcctccACTGCCAAAACCACCTGAGAGCTCT 821
||||||||||||||||||||||||||||||| |||
Sbjct 238 CTCCTCCTCCACTGCCAAAACCACCTGAGAGTTCT 272
> Ahg472802 jgi|Araly1|472802|fgenesh2_kg.1__2756__AT1G26150.1
Length=2704
Score = 1022 bits (553), Expect = 0.0
Identities = 1081/1331 (81%), Gaps = 55/1331 (4%)
Strand=Plus/Plus
Query 1422 GCTGTTGTTGGTATCAGTGTAGCAGTAGCACTTGTGGT-CTTCACTCTTTTTGGTA-TCT 1479
|||||||| ||| | ||| | | ||| || || ||| | ||| | |||| |||| | | |
Sbjct 1321 GCTGTTGTGGGTGTAAGTATTGGAGTGGCCCTAGTGCTGCTT-AGTCTTATTGG-AGT-T 1377
Query 1480 -TTGTCTGGTGCTTGAGGAAACGAGAAAAA-CGCCTTTCAGCTGTTAGTGGTGGCGATGT 1537
||||||||||||| | ||||||| ||||| | || ||| | || |||||||| ||||
Sbjct 1378 ATTGTCTGGTGCTTAAAGAAACGA-AAAAAGAGGCTCTCAACCATTGGTGGTGGCTATGT 1436
Query 1538 TACACCATCACCAAT-GA--GCT-CTACCGCAAGATCAGATTCAGCATTTTTTAGGATGC 1593
|| ||| |||| || || || || || |||||||||||||||| || | | || ||
Sbjct 1437 TATGCCAACACCTATGGATTCCTCCT-CCCCAAGATCAGATTCAGCGCTTCTGAAGACGC 1495
Query 1594 AGTCATCTGCACCTGT--TGGAGCAA--G--CAAGCGTTCGGGC--AGTTAT--CAATCA 1643
||||||| |||||| | ||| | || | | ||| ||| | | || | ||||||
Sbjct 1496 AGTCATCCGCACCTCTAGTGG-GAAATCGTTCTAGCAATCGAACATACTTTTCACAATCA 1554
Query 1644 CAATCC-GGTGGCTTAGG-CAATTCGAAAGCATTGTTTTCCTATGAAGAACTTGTGA-AG 1700
| || ||||| || || ||| |||| | | |||| || |||||||||||||| | |
Sbjct 1555 -GAGCCTGGTGGTTTTGGTCAA-TCGAGGGAACTGTTCTCATATGAAGAACTTGTCATA- 1611
Query 1701 GCAACAAATGGTTTTTCACAAGAAAATCTATTAGGTGAAGGTGGATTTGGTTGTGTATAT 1760
||||||||||| || ||| | ||||||||||| |||||||||||||||||| |||| |||
Sbjct 1612 GCAACAAATGGATTCTCAGATGAAAATCTATTGGGTGAAGGTGGATTTGGTCGTGTGTAT 1671
Query 1761 AAAGGGA-TATTACCTGATGGGAGAGTAGTTGCTGTGAAACAACTAAAGATCGGTGGAGG 1819
||| ||| | ||||| |||| ||||| ||||||||||||||| |||| || ||||||||
Sbjct 1672 AAA-GGAGTCTTACCAGATGAAAGAGTGGTTGCTGTGAAACAATTAAAAATAGGTGGAGG 1730
Query 1820 ACAAGGTGACAGGGAGTTTAAAGCCGAAGTTGAAACTC-TTAGCAGAATTCATCACCGCC 1878
|||||||||| | ||||| |||||||| ||||| || | ||||||| | ||||||||
Sbjct 1731 ACAAGGTGACCGAGAGTTCAAAGCCGAGGTTGAGAC-CATTAGCAGGGTACATCACCGGA 1789
Query 1879 ATTTGGTTTCAATCGTGGGACATTGTATCTCTGGTG-ACCGTAGATTGCTTATCTATGAT 1937
||||| |||| || || ||| | || || || | | |||| ||||||||||| ||||||
Sbjct 1790 ATTTGCTTTCTATGGTTGGATACTGCATTTC-CGAGAACCGGAGATTGCTTATTTATGAT 1848
Query 1938 TATGTTTCTAACAATGACCTTTACTTCCACCTTCATG--G-AGAAAAAT-CTGTTCTAGA 1993
||||| |||| || ||||||||||||| ||||| | | || || | | | ||||||
Sbjct 1849 TATGTCCCTAATAACAACCTTTACTTCCATCTTCACGCCGCAG-GAACTCCGGGTCTAGA 1907
Query 1994 CTGGGCAACACGTGTTAAAATTGCGGCTGGGGCAGCTCGTGGACTAGCTTATCTTCATGA 2053
|||||||||||||||||||||||| ||||| || |||||||||||||||||||| |||||
Sbjct 1908 CTGGGCAACACGTGTTAAAATTGCTGCTGGTGCGGCTCGTGGACTAGCTTATCTCCATGA 1967
Query 2054 AGATTGTCATCCGCGTATCATTCACAGGGACATCAAGTCGTCTAACATTCTTTTAGAGGA 2113
|||||||||||| |||||||| ||||||||||| || || || |||||||| ||||||||
Sbjct 1968 AGATTGTCATCCTCGTATCATACACAGGGACATTAAATCATCCAACATTCTCTTAGAGGA 2027
Query 2114 CAACTTTGATGCTCGGGTTTCTGACTTTGGCCTTGCAA-GATTAGCTCTTGATTGTAACA 2172
||||| | |||| |||||||||||| |||||||||| | | |||||| || |||||||
Sbjct 2028 TAACTTCCACGCTCTGGTTTCTGACTTCGGCCTTGCAAAGCT-AGCTCTCGACTGTAACA 2086
Query 2173 CTCATATCACCACACGGGTCATCGGAACATTTGGCTATATGGCTCCTGAATATGCATCAA 2232
| ||||| || || ||||| || |||||||| || || ||||||||||||||||||||||
Sbjct 2087 CACATATTACAACTCGGGTTATGGGAACATTCGGATACATGGCTCCTGAATATGCATCAA 2146
Query 2233 GTGGAAAATTAACAGAGAAATCAGATGTATTCTCCTTTGGGGTTGTTCTGCTGGAGTTAA 2292
|||| |||||||| || |||||||| |||||||||||||| |||||||| ||||||||||
Sbjct 2147 GTGGCAAATTAACCGAAAAATCAGACGTATTCTCCTTTGGCGTTGTTCTACTGGAGTTAA 2206
Query 2293 TCACTGGACGTAAACCGGTGGATACATCGCAACCACTGGGAGATGAGAGCCTTGTTGAAT 2352
||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 2207 TCACTGGACGTAAGCCCGTGGATACATCCCAACCTCTGGGAGATGAGAGCCTTGTTGAAT 2266
Query 2353 GGGCCCGGCCTTTGATAAGTCATGCCATAGAAACCGAGGAATTTG-ATTCTTTAGCAGAT 2411
|||| || |||||| | ||||||||||| |||||||| || ||| | |||| ||||||
Sbjct 2267 GGGCTCGTCCTTTGCTTAGTCATGCCATTGAAACCGAAGATTTTACAG-CTTTGGCAGAT 2325
Query 2412 CCTAAGCTTGG-AGGAAACTATGTAGAATCT-GAAATGTTT-AGAATGATTGAAGCAGCA 2468
|| ||||| || || ||||||||| | | | ||||| ||| |||||||||||||||||
Sbjct 2326 CCCAAGCTAGGTAG-AAACTATGTTGG-TGTTGAAAT-TTTCAGAATGATTGAAGCAGC- 2381
Query 2469 GG-AGCCTGCGTGCGGCATTTAGCTACCAAGAGACCTCGGATGGGACAAATTGTGAGAGC 2527
|| ||| || | || |||| |||| | ||||||||||| ||| | ||||||||||||||
Sbjct 2382 GGCAGCTTGTATTCGCCATTCAGCTGCAAAGAGACCTCGAATGAGTCAAATTGTGAGAGC 2441
Query 2528 TTTTGAAAGTTTAGCTGCGGAAGACCTTACTAACGGAATGAGACTAGGCGAAAGCGAGGT 2587
||| || ||| |||||| ||||||||| || || ||||||||||||||||||||||| |
Sbjct 2442 TTTCGACAGTCTAGCTGAGGAAGACCTCACCAATGGAATGAGACTAGGCGAAAGCGAAAT 2501
Query 2588 CTTTAACTCAGCTCAACAGTCAGCAGAGATCAGATTGTTTAGAAGAATGGCATTTGGTAG 2647
| | ||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 2502 CATCAACTCAGCTCAGCAGTCTGCAGAAATCAGATTGTTTAGAAGAATGGCTTTTGGTAG 2561
Query 2648 CCAAAATTACAGTACAGATTTTTTCTCGCATAGTAGTTACAATA-GCAGAGACGCAAACG 2706
|||||| ||||||||||||| |||| | | || |||| | | || ||| ||| | |||||
Sbjct 2562 CCAAAACTACAGTACAGATTCTTTCACTCGTATTAGTAATA-TAAGCAAAGATGAAAACG 2620
Query 2707 TGTAAATATCA 2717
||| |||||||
Sbjct 2621 TGTGAATATCA 2631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115184900880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5