BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68720.1
Length=4215
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339115 jgi|Araly1|339115|fgenesh1_pg.C_scaffold_2001214 3620 0.0
> Ahg339115 jgi|Araly1|339115|fgenesh1_pg.C_scaffold_2001214
Length=3408
Score = 3620 bits (1960), Expect = 0.0
Identities = 2269/2415 (94%), Gaps = 34/2415 (1%)
Strand=Plus/Plus
Query 772 GAAAGATATGATTGTGAACATTGTGGGAGGAGAAAGAAAAGTTCTGAGTTGGAGAGTGAA 831
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 319 GAAAGATATGATTGTGAACATTGTGGGAGGATAAAGAAAAGTTATGAGTTGGAGAGTGAA 378
Query 832 TCTCGGCGTGGTTCTAAATTGGTTACTGGTGAGTATATTGGAAAAAGTTATAGGGGGGAT 891
||||||||||||||||||||||||||||||||| | | ||| |
Sbjct 379 TCTCGGCGTGGTTCTAAATTGGTTACTGGTGAG-----T------A--TAT--------T 417
Query 892 GAAGAAAGAGAAGTTCGGCCAAGAAGGA-GAAAGAGTTCGAGTTGTTCATCGTATTATTC 950
|||||||||| ||||||||| ||||| | | ||||||||||||||||| |||||||||||
Sbjct 418 GAAGAAAGAGTAGTTCGGCCTAGAAGAACG-AAGAGTTCGAGTTGTTCGTCGTATTATTC 476
Query 951 CCTTGCTTCTTCAGGGGAGTTTGAGAGTGATACTGAAGATCAGGAGGAGGATGTAGAGAT 1010
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 477 CCTTGCTTCTTCAGGGGAGTTTGAGAGTGATACTGAAGATCAGGAGGAGGATGTGGA-AA 535
Query 1011 TTA-TCGCGAAAACGTGAGAAGTTCAGAGAAGAAGGTTGTTGATCAGTCAGCCAAAAGAT 1069
||| ||| ||||| |||||||||||| ||||||| ||||||| |||||||||||| |||
Sbjct 536 TTAGTCGTGAAAAGGTGAGAAGTTCAAAGAAGAAAATTGTTGACCAGTCAGCCAAAGGAT 595
Query 1070 TGAAATCTAGAAAGGAAGCCTCTCAGATGCATTCAAGGAAAAAGAGAGATGAGAGCTCTA 1129
|||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 596 TGAAATCTAGAAAGGAAGCCTCTCTGATGCATTTGAGGAAAAAAAGAGATGAGAGCTCTA 655
Query 1130 CTGGAGTGGATTCAAGGTATCAGAAGCAGATTTTTGAGGAAGGGGAAAATTCAAATCAGG 1189
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 656 ATGGAGTGGATTCAAGGTATCAGAAGCAGGTATTTGAGGAAGGGGAAAATTCAAATCAGG 715
Query 1190 CAGTGACTTTGAACCAGCGAAGAAGAAAAAAGTTTAGTCAAACTGAAAATAGAGTGTCTG 1249
||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||
Sbjct 716 CAGTGACTTTGAACCAGAGAAGAAGAAAGAAGTTTAGTCAAACTGGTAATAGAGTGTCTG 775
Query 1250 AATCTACGGGAAATTATGAAGAAGATATGGAAATTCATGAGGTCCATGTCAACGATGCAG 1309
|||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 776 AATCGACGGGAAGCTATGAAGAAGATATGGAAATTCATGAGATCCATGTCAACGATGCAG 835
Query 1310 AGACCAGTTCCCAAAATCAAAAGCTCTTTAATGAAAGGGAGGACTATAGAGTTCACTCAA 1369
|||| ||||| ||||||||||||||| || ||||||||||||||||||||| |||||||
Sbjct 836 AGACTAGTTCTCAAAATCAAAAGCTCATTGGTGAAAGGGAGGACTATAGAGTCCACTCAA 895
Query 1370 TTCGTAATGATTCTGGAAACGAAAACATTGAGAGTTCTCAGCATCAATTGAAAGAAAGAT 1429
||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||
Sbjct 896 TTCGTAATGATTCTGGAAACGAAAACATTGAGAGTTCTCAGGAGCAATTGAAGGAAAGAT 955
Query 1430 TGGAGACTCGTTATAGCAGTGAGGATAGAGTATCTGAAATGCGAAGAAGAACCAAATATA 1489
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 956 CGGAGACTCGTTATAGCAGTGAGGATAGAGTATCTGAATTGCGAAGAAGAACCAAATATA 1015
Query 1490 GCAGTAGCCAGGAGGAAGGTATAAATGTGCTCCAAAATTTTCCGGAGGTGACAAATAATC 1549
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1016 GCAGTAGCCAGGAGGAAGGTATAAATGTGCTCCAAAATTTTCCAGAGGTGACAAATAATC 1075
Query 1550 AGCAACCTCTAGTGGAAGAAAGGATATCTAAGCAAGCTGGTACGAGAAGGACTACTGAAC 1609
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1076 AGCAACATCTAGTGGAAGAAAGGATATCTAAGCAAGCTGGTAGGAGAAGGACTACTGAAC 1135
Query 1610 A-TATTTCTGAAAGTTCAGAAATTCATGACATAGACATCAGAAATACATATGTCTCGCAA 1668
| | ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1136 ACT-TTTCTGAAAGTTCAGAAATTCATGACACAGACATCAGAAATACATATGTCTCACAA 1194
Query 1669 AGAGAAGACCAGATTAGAAACCAAGAAGTACATGCTGGCTTGGTTTCTGGTTTGCAATCT 1728
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 AGCGAAGACCAGATTAGTAACCAAGAAGTACATGCTGGCTTGGTTTCTGGTTTGCAATCT 1254
Query 1729 GAAAGGAAGCAGCAAGATTATCATATTGAACATAATCCCTTGCAAACGACGCAATCTGAC 1788
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1255 GAAAGGAAGCAGCAAGATTATCATATTGAACATAATCCCTTGCAAAAGACGCAATCTGAC 1314
Query 1789 AGAACTTCTGTGTCTGTATCTCATACTAGTGATGCAGTAAGGTATACAGAAATTCAGAGA 1848
|||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct 1315 AGAACTTCTGTGTCTGTATCTCATACCAGTGATGCAGTAAGTTATACTGAAATTCAGAGA 1374
Query 1849 AAATCTGAGAAGAGGCTGATTGGTCAAGGAAGTACTACGGCTGTGCAATCGGACAGCAAA 1908
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1375 AAATCCGAGAAGAGGCTGATTGGTCAAGGAAGTACTACGATTGTGCAATCGGACAGCAAA 1434
Query 1909 GTAGaaaaaaaTGGTGCTCAGAAAGAAGACTCTAGGTTAGATCATGCTAACTCGAAAAAA 1968
|||||||||| ||||||| |||||||| ||||||| ||||||| |||||||||||| ||
Sbjct 1435 GTAGAAAAAAGTGGTGCTTGGAAAGAAGGCTCTAGGCTAGATCAGGCTAACTCGAAACAA 1494
Query 1969 GATGGTCAAACGACCTTAGGGTTGCAAAGTTATCAGTCAAAGCTATCTGAAGAGGCCTCA 2028
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 GAAGATCAAACGACCTTAGGGTTGCAAAGTTATCAGTCAAAGCTATCTGAAGAGGCCTCA 1554
Query 2029 AGTTCACAATCATCTTTGATGGCCTCGCG-AACTAAATTACAACTGGTAGATCTGGTTTC 2087
|||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||
Sbjct 1555 AGTTCACAATCATCTTTGATGGTCTCGCGAAAC-AAATTACAACTGGTAGATCTGGTTTC 1613
Query 2088 AGAGGAAATGCAAGGATCTGAAACGACACTGATTCCTCCTTCTTCTCAGCTGGTAAGCAG 2147
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1614 AGAGGAAATGCAAGGATCTGAAACAACACTGATTCCTCCTTCTTCTCAGCTGGTAAGCAG 1673
Query 2148 AAGATCAGGACAAAGCTACAGAACTGGTGGAGTTTCCATTCAAGAAATTTCCCATGGAAC 2207
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 AAGATCAGGGCAAAGCTATGGAACTGGTGGAGTTTCCATTCAAGAAATTTCCCATGGAAC 1733
Query 2208 TTCAGAAAGTGGTTATACCACAGCCTTTGAACATCCAAGAGCAGGAG---CTTCTGTTAA 2264
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1734 TTCAGAAAGTGGTTATCCCACAGCCTTTGAACATCCAAGAGCAGGAGCTTCTTCTGTTAA 1793
Query 2265 TAGTCAGTCTGCTGGAGAACTGATGGGATTTACGTCACATGAAGATGCTATGGGTTCTGC 2324
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1794 TAGTCAGTCTGCTGGAGAACTGATGGGATTTACATCACATGAAGATGCTATGGGTTCTGC 1853
Query 2325 TCATCGGTTGGAACAGGCATCAGAGAAATATGTTGGGGAGTTTGTGAAAAAGGCCAAACA 2384
|| ||||||||||||| ||||||||||||| |||||||||||| |||||| |||||||||
Sbjct 1854 TCGTCGGTTGGAACAGTCATCAGAGAAATACGTTGGGGAGTTTTTGAAAAGGGCCAAACA 1913
Query 2385 TGGAGTTATAAATCCGGAGACTGAGGAGCAAAGAGCTGAAAGCAATCAATTGAAGAGGCG 2444
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1914 TGAAGTTATAAATCCGGAGACTGAGGAGCAAAGAGCTGAAAGCAATCAATTGAAGAGGCG 1973
Query 2445 GGACTCAAGGCGATCATCTGGTGGTTCAGGAGCAAAGGGACCTTCAGATGAAATGTGGGT 2504
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1974 GGACTCAAGGCGGCCATCTGGTGGTTCAGGAGCAAAGGGACCTTCAGATGAAATGTGGGT 2033
Query 2505 AACGGATTCTGCTCAGGGAACTCCTCATCCAGGAGCCACAGAAGGCAATGCAGCAG-TGG 2563
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 2034 AACAGATTCTGCTCAGGGAACTCCTCATCCAGGAGCCACAGAAGGCAATGCAGCAGAT-G 2092
Query 2564 GGAATGCTATTTTTAAAAGAAATGGTAGGTCGTTGTGGAATGTTATAGCTGATATTGCTC 2623
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2093 GGAATGCTATTTTCAAAAGAAATGGTAGGTCCTTGTGGAATGTTATAGCTGATATTGCTC 2152
Query 2624 GGCTTAGGTGGGGCTCCCGAGCTGGAAGCCCTGACTCGAGTGCAAAGCCCGCTGGAAGGA 2683
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 2153 GGCTTAGGTGGGGATCCCGAGCTGGGAGCCCTGACTCGAGTGCAAAGCCCGCTGGAAAGA 2212
Query 2684 GTTCACCCAACGAATCAGTTAGCAGTGCAACATGGTTTTCTGGACGTGAGCATGACGGAA 2743
|||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2213 GTTCACCCAATGAGTCAGTTAGCAGCGCAACATGGTTTTCTGGACGTGAGCATGACGGAA 2272
Query 2744 GCAGTGATGATAACACAAAAGGGGATAAAGTTTTGCCACAAGAAGCTCCTTCCCTACATC 2803
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2273 GCAGTGATGATAACACAAAAGGGGATAAAGTTTTGCCACAAGAAGCTCCTTCCCTAAATC 2332
Query 2804 AGGTGGAGGTTGGTCAAACTTCTCCTAGAAGCCAATCTGAATATCCCGGCACTACAAAAC 2863
|| ||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||
Sbjct 2333 AGTTGGAGGTTGGTCAAACTTCTCCTAGAAGCCAATTTGAATATTCCAGCACTACAAAAC 2392
Query 2864 TGAAGCAGCGATCTGAACGGCATGAAGGTGTGGTATCATCGCCATCTTCCACAATATTAG 2923
|||||||||||||||||| |||||||||||||||||||| | |||||||||||||| |||
Sbjct 2393 TGAAGCAGCGATCTGAACAGCATGAAGGTGTGGTATCATTGTCATCTTCCACAATAGTAG 2452
Query 2924 AGGGTGGCTCAGTATCGAATCGCATGTCTTCCACATCTGGTAATCAAATTGTTGGTGTGG 2983
|||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 2453 AGGGTGGCTCAGTATCCAATCACATGTCTTCTACATCTGGTAATCAAATTGTTGGTGTGG 2512
Query 2984 ATGAAGAAGAAGGTGGAAACTTTGAGTTCCGTCTTCCTGAAACAGCTTTGACAGAGGTTC 3043
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2513 ATGAAGAAGAAGGCGGAAACTTTGAGTTCCGTCTTCCTGAAACAGCTTTGACAGAGGTGC 2572
Query 3044 CAATGAAACTGCCTAGTCGGAACCTGATAAGATCTCCTCCTATTAAGGAATCTTCAGAAT 3103
||||||||||||||||||| |||||||||||||||||| |||| |||||| |||||||||
Sbjct 2573 CAATGAAACTGCCTAGTCGAAACCTGATAAGATCTCCTGCTATCAAGGAACCTTCAGAAT 2632
Query 3104 CTAGTCTTACCGAGGCATCCAGTGATCAAAATTTTACTGTGGGGGAAGGAAGACGCTACC 3163
|||||| ||||||||| |||||||||||||| |||||||||| ||||||||||||||||
Sbjct 2633 CTAGTCCCACCGAGGCACCCAGTGATCAAAATGTTACTGTGGGAGAAGGAAGACGCTACC 2692
Query 3164 CTAGAATGGATGCAG 3178
|| ||||||||||||
Sbjct 2693 CTGGAATGGATGCAG 2707
Score = 1155 bits (625), Expect = 0.0
Identities = 682/709 (96%), Gaps = 5/709 (1%)
Strand=Plus/Plus
Query 3346 GCAGACTCTGCGTTGATACAAAGGAAACTTCAGAGGAATAAACAGGTTGTGAGGGATAGT 3405
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2704 GCAGACTCTGCGTTGATACAAAGGAAACTTCAGAGGAACAAACAGGTTGTGAGGGATAGT 2763
Query 3406 TTTGAGGAGTGGGAAGAAGCATACAAGGTAGAAGCTGAAAGACGAACAGTTGATGAAATA 3465
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 2764 TTTGAGGAGTGGGAGGAAGCATACAAAGTAGAAGCTGAAAGGCGAACAGTTGATGAAATA 2823
Query 3466 TTCATGAGGGAAGCGTTAGTTGAAGCTAAGAAGGCTGCTGATACATGGGAGGTACCTGTC 3525
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2824 TTCATGAGAGAAGCGTTAGTAGAAGCTAAGAAGGCTGCTGATACATGGGAGGTACCTGTC 2883
Query 3526 GGTGCTGTGCTTGTTCATGATGGAAAGATTATTGCCCGTGGTTATAACCTAGTAGAGGAG 3585
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 2884 GGTGCTGTGCTTGTTCATGATGGGAAGATTATTGCCCGGGGTTATAACCTAGTAGAGGAG 2943
Query 3586 CTTCGTGATTCAACTGCCCATGCAGAAATGATTTGCATTCGAGAGGGTTCTAAAGCACTT 3645
||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2944 CTTCGGGATTCAACCGCCCATGCAGAAATGATTTGCATTCGAGAGGGTTCCAAAGCACTT 3003
Query 3646 CGTTCATGGAGGCTCGCGGATACAACGCTCTATGTAACACTAGAACCGTGCCCAATGTGT 3705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3004 CGTTCATGGAGGCTCGCGGATACAACGCTCTATGTAACACTAGAACCGTGCCCAATGTGT 3063
Query 3706 GCGGGAGCAATACTTCAAGCAAGGGTCAACACTCTTGTATGGGGTGCTCCC-AATAAGCT 3764
||||||||||||||||||||||||||||||||||| || |||||||| ||| ||||||||
Sbjct 3064 GCGGGAGCAATACTTCAAGCAAGGGTCAACACTCTAGTGTGGGGTGC-CCCGAATAAGCT 3122
Query 3765 TCTCGGAGCAGATGGAAGCTGGATCAGGCTGTTCCCTGGAGGCGAAGGAAATGGATCAGA 3824
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3123 TCTCGGAGCAGATGGCAGCTGGATCAGGCTGTTCCCTGGAGGCGAAGGAAATGGATCAGA 3182
Query 3825 GGCTTCAGAAAAGCCACCACCTCCAGTTCATCCATTCCATCCTAAGATGACAATCCGGCG 3884
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3183 GGTTTCAGAAAAGCCACCGCCTCCAGTTCATCCATTCCATCCTAAGATGACAATCCGGCG 3242
Query 3885 CGGAGTTCTTGAATCAGAATGCGCTCAGACAATGCAGCAGTTTTTCCAGCTTAGGAGAAA 3944
||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 3243 CGGAGTTCTCGAATCAGAATGTGCTCAGACAATGCAGCAGTTTTTCCAACTTAGGAGAAA 3302
Query 3945 AAAGAAAGACAAGAACTCAGATCCACCTACTCCTACCGatcatcatcatcatcatcTTCC 4004
||||||||| |||| ||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 3303 AAAGAAAGAGAAGATCTCAGATCCACCTACTCCTACCGATCATCATCA-C--CATCTTCC 3359
Query 4005 CAAACTCCTCAACAAGATGCATCAAGTCTTACCCTTTTTCTGTCTGTAG 4053
||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3360 CAAACTCCTCAACAAAATGCATCAAGTCTTACCCTTTTTCTGTCTGTAG 3408
Score = 534 bits (289), Expect = 2e-150
Identities = 309/319 (97%), Gaps = 0/319 (0%)
Strand=Plus/Plus
Query 130 ATGTTCAATACATACACAAACTCACTTCAATGGCCGATTCGAAGTAGAAATCAACAAGAT 189
|||||||||||||||||||| ||| ||| |||||||||||||||||||||||| ||||||
Sbjct 1 ATGTTCAATACATACACAAATTCAGTTCTATGGCCGATTCGAAGTAGAAATCACCAAGAT 60
Query 190 TACTGCTCTTTGCTCCCTGAGAGATCTGAAAGTTACAAACTTTCAAAAGCATATACATCT 249
||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 61 TACTGCTCTTTGCTCACTGAGAGATCTGAAAGTTACCAACTTTCAAAAGCATCTACATCG 120
Query 250 TCGAGATGTTACTGTGTTAGTTCTCGCTCAAGCTGTTGCTGTTGTTGTTCAACACCATCT 309
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 TCGAGATGTTACTGTGTTAGTTCTCGCTCAAGTTGTTGCTGTTGTTGTTCAACACCATCT 180
Query 310 TCTTCTTCATTTGTTAAGCCTAAGGTATTGATAAACCCTGGATTTGTGCTTTATGGGGTT 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTTCTTCATTTGTTAAGCCTAAGGTATTGATAAACCCTGGATTTGTGCTTTATGGGGTT 240
Query 370 AGACAATCTACGCTTATTCAGTGGCCTTCGTTTCAAAGGAGGTTACTTGTGGGTGGAGGG 429
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 AGACAATCTACGCTTATTCAGTGGCCTTCGTTTCAAAGGAGGTTGCTTGTGGGTGGAGGG 300
Query 430 AGACTTATGGGTTGTGAGG 448
|||||||||||||||||||
Sbjct 301 AGACTTATGGGTTGTGAGG 319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 159385115724
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5