BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68725.1
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315891 jgi|Araly1|315891|fgenesh1_pm.C_scaffold_2000924 651 0.0
> Ahg315891 jgi|Araly1|315891|fgenesh1_pm.C_scaffold_2000924
Length=759
Score = 651 bits (352), Expect = 0.0
Identities = 563/658 (86%), Gaps = 42/658 (6%)
Strand=Plus/Plus
Query 98 CCTCC-ACAACCACTGCTCCGCCTCCAACAACTGCTGCTCCTCCAACCACTGCTGCTCCG 156
||||| || ||||||||||| |||||||| || ||||||||||||||||| ||||||||
Sbjct 136 CCTCCAACCACCACTGCTCCTCCTCCAACCACAGCTGCTCCTCCAACCACAGCTGCTCCT 195
Query 157 CCTCCAACTACCA-CTACTCCACCCGTTTC-AGCTGCGC-A-GCCACCAGCATCTCCGGT 212
|||||||| | || || |||| || | | | | | | | ||||||| | | | |
Sbjct 196 CCTCCAACCA-CAGCTGCTCC-GCC--TCCAACCACCACTACTCCACCAG--T-TTCAGC 248
Query 213 TACACCTCCACCAGCAGTTACTCCAACTTCACCACCAGCTCCAAAAGTTGCACCAGTAA- 271
||| | |||||||||||| ||||||||||| ||||||| |||||||||||||||||||
Sbjct 249 TACTCAGCCACCAGCAGTTGCTCCAACTTCATCACCAGCACCAAAAGTTGCACCAGTAAG 308
Query 272 TCAGCCCCGCAACTCCGCCTCCACAACCACCACAAAGCCCGCCCGCTTCAGCTccaaccg 331
| |||||||| ||||| ||||| |||||||||||||||||||| | || | | | |
Sbjct 309 T-AGCCCCGCTACTCCACCTCCGCAACCACCACAAAGCCCGCCTG-TT----T-C-A--G 358
Query 332 tctcaccaccacctgtatcaccaccaccagcaccgacgtctcccccacccacaccagctt 391
|| ||| || || |||||||||||||||||||| |||||||||||| |||||||||
Sbjct 359 -CT--CCA--TCC-GTCTCACCACCACCAGCACCGACTTCTCCCCCACCCGCACCAGCTT 412
Query 392 caccaccacctgcaccagct-tctccacctcctgcaccagcttcaccgccacctgcacca 450
|||||||||||||||||| | |||||||| || ||||||||||| || ||| || ||||
Sbjct 413 CACCACCACCTGCACCAG-TATCTCCACCACCCGCACCAGCTTCTCCACCAGCTTCACC- 470
Query 451 GTTTCCCCACCCCCTGTACAAGCGCCAT-CACCAATAAGTTTACCACCAGCTCCAGCACC 509
| ||| || | ||||||||| | |||| |||||| |||||||||||||||||||
Sbjct 471 G-----CCA---CCAGCACAAGCGCC-TACACCTATAAGTCTACCACCAGCTCCAGCACC 521
Query 510 GGCTCCTACCAAGCACAAGAGAAAGCACAAACACAAAAGGCATCACCATGCCCCAGCTCC 569
||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 522 GGCTCCTGCCAAGCACAAGAGAAAACACAAACACAAAAGACATCACCATGCCCCAGCTCC 581
Query 570 AGCACCAATTCCCCCAAGCCCTCCATCTCCTCCAGTTCTAACAGATCCACAGGACACGGC 629
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 582 AGCACCAATTCCCCCAAGCCCTCCATCTCCTCCAGTTCTAACAGATTCACAGGACACAGC 641
Query 630 TCCAGCACCATCACCAAACACGAATGGAGGAAATGCCTTAAATCAGCTTAAAGGAAGAGC 689
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 642 TCCAGCACCATCACCAAACACAAATGGAGGAAATGCCTTAAATCAGCTGAAAGGAAGAGC 701
Query 690 AGTAATGTGGCTCAATACTGGACTAGTAATCCTCTTTCTACTTGCTATGACAGCCTAA 747
||||| |||||||||||||||||||| |||||||||||| || |||||||||||||||
Sbjct 702 AGTAACGTGGCTCAATACTGGACTAGGAATCCTCTTTCTGCTGGCTATGACAGCCTAA 759
Score = 254 bits (137), Expect = 9e-67
Identities = 155/164 (95%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 1 ATGGAATCAAATTCAATCATTTGGTCTCTTCTTTTGGCTTCTGCTCTCATCTCTTCCTTT 60
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGATTCAAATTCAATCATTTGGTCTCTTCTTTTAGCTTCTGCTCTCATCTCTTCCTTT 60
Query 61 AGTGTAAATGCACAAGGACCTGCTGCTTCACCAGTAACCTCCACAACCACTGCTCCGCCT 120
|||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 61 AGTGCAAATGCACAAGGACCTGCTGCTTCACCGGCAACCTCCACAACCACTGCTCCGCCT 120
Query 121 CCAACAACTGCTGCTCCTCCAACCACTGCTGCTCCGCCTCCAAC 164
||||| |||||||||||||||||||| ||||||| ||||||||
Sbjct 121 CCAACCACTGCTGCTCCTCCAACCACCACTGCTCCTCCTCCAAC 164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27524746074
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5