BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G68730.1

Length=513
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg315892 jgi|Araly1|315892|fgenesh1_pm.C_scaffold_2000925           706    0.0  


> Ahg315892 jgi|Araly1|315892|fgenesh1_pm.C_scaffold_2000925
Length=516

 Score =  706 bits (382),  Expect = 0.0
 Identities = 475/519 (92%), Gaps = 9/519 (2%)
 Strand=Plus/Plus

Query  1    ATGGCGAATACTGCCGCCGGTTGGTCTCCGGTTTTGGCTCCAATCTATTCTCCG----GT  56
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||    ||
Sbjct  1    ATGGCGAATACTGCCGCCGGTTGGTCTCCGGTTTTGCCTCCAATCTATTCTCCGATAAGT  60

Query  57   --AAACACAAAGCCAATCAATTTTCACTTCTCAGCTTCTTTCTACAAGCCTCCTCGTCCA  114
               ||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||| 
Sbjct  61   GCTAACCCAAAGCCAATCAATTTTCACATCTCAGCTTCTTTCTACAAACCTCCTCGTCCC  120

Query  115  TTTTACAAGCAGCAAAACCCTATATCGGCTCTACACAGGTCGAAAACTACTCGTGTGATA  174
            |  ||| |||| |||||| ||||||||||||||| ||||| |||||||||||||||||||
Sbjct  121  TCGTACCAGCATCAAAACTCTATATCGGCTCTACGCAGGTTGAAAACTACTCGTGTGATA  180

Query  175  GAGGTAGTAACACCAAAGCAAAGGAATCGTTCTTTTTCTGTTTTTGGATCACTCGCTGAT  234
            ||| |||||||||| |||||||||||||||||| |||||||||||||||||||| |||||
Sbjct  181  GAGATAGTAACACCCAAGCAAAGGAATCGTTCTGTTTCTGTTTTTGGATCACTCACTGAT  240

Query  235  GATTCTAAGTTAAACCCAGATGAAGAATCAAATGATTCCGCAGAGGTAGCTTCTATAGAT  294
            |||||||||||||||||||||||||||||||| || | | || |  ||||||||||||||
Sbjct  241  GATTCTAAGTTAAACCCAGATGAAGAATCAAAGGACT-CACA-A-TTAGCTTCTATAGAT  297

Query  295  ATTAAGCTACCGAGAAGAAGTTTGCAAGTGGAATTTACTTGCAATTCATGTGGAGAAAGA  354
            |||||| ||||||||||||||||||  |||||||||| |||  |||||||||||||||||
Sbjct  298  ATTAAGTTACCGAGAAGAAGTTTGCTTGTGGAATTTAGTTGTGATTCATGTGGAGAAAGA  357

Query  355  ACTAAGCGGCTTATCAATAGGCATGCCTATGAAAAGGGCCTTGTCTTTGTTCAATGTGCA  414
            |||||||||||||||||| ||||||| |||||||| ||||||||||||||||| ||||||
Sbjct  358  ACTAAGCGGCTTATCAATCGGCATGCTTATGAAAATGGCCTTGTCTTTGTTCAGTGTGCA  417

Query  415  GGGTGTCTAAAGCATCATAAACTGGTTGACAATCTTGGTCTCATTGTTGAGTATGATTTC  474
            ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  418  GGGTGTCTTCAGCATCATAAACTGGTTGACAATCTTGGTCTCATTGTTGAGTATGATTTC  477

Query  475  CGGGAAACCTCCAAGGATTTGGGTACCGATCACGTTTGA  513
            ||||||||||||||||||| |||||||||||| ||||||
Sbjct  478  CGGGAAACCTCCAAGGATTCGGGTACCGATCAAGTTTGA  516



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18658083021


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5