BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G68735.1

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926161 jgi|Araly1|926161|scaffold_201722.1                        305    7e-83


> Ahg926161 jgi|Araly1|926161|scaffold_201722.1
Length=265

 Score =  305 bits (165),  Expect = 7e-83
 Identities = 206/225 (92%), Gaps = 6/225 (3%)
 Strand=Plus/Plus

Query  4    TCTAAAACTCCCGTTCTTGCTATCTTCAT-G-CGTCCTCGTTCTAGGGCTGGTGATAAAT  61
            |||||| || ||||||||||||||||||| | |||||| |||||||| ||||||||||| 
Sbjct  24   TCTAAAGCTTCCGTTCTTGCTATCTTCATGGTCGTCCTTGTTCTAGGACTGGTGATAAA-  82

Query  62   TTATGTCACAAGGACAAGAACTGTGTCATGAATATTTTCAATTAACAGCACCATGTGAAA  121
              | | | |||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct  83   GGA-GACGCAAGGACAAGAACTGTGTCATGAATATTTTCAGTTAACCGCACCATGTGAAA  141

Query  122  AGCAACCA-TGTATTGATATGTGTAGTTCGAAGTACAAGACTGGAAAAGGCGTTTGCGGG  180
            | ||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  142  AACAA-CAGTGTATCGATATGTGTAGTTCGAAGTACAAGACTGGAAAAGGCGTTTGCGGG  200

Query  181  CCAGCGGTACATCAATGCTTCTGCACTTTTAGTTGCACAGTTTAA  225
            |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  201  CCAGCGGTCCATCAATGCTTCTGCACTTTTAGTTGCACAGTTTAA  245



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7714028722


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5