BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68750.1
Length=3102
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315894 jgi|Araly1|315894|fgenesh1_pm.C_scaffold_2000927 5025 0.0
Ahg313369 jgi|Araly1|313369|fgenesh1_pm.C_scaffold_1002149 1812 0.0
> Ahg315894 jgi|Araly1|315894|fgenesh1_pm.C_scaffold_2000927
Length=3099
Score = 5025 bits (2721), Expect = 0.0
Identities = 2973/3099 (96%), Gaps = 0/3099 (0%)
Strand=Plus/Plus
Query 4 ATGACGGACACAACAGACGATATCGCAGAGGAAATCTCATTCCAAAGCTTCGAAGATGAC 63
||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1 ATGACGGACACGACAGATGATATCGCGGAGGAAATCTCATTCCAAAGCTTCGAAGACGAC 60
Query 64 TGCAAATTGCTCGGTAGTCTCTTCCATGATGTGTTACAAAGGGAAGTTGGCAACCCATTC 123
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 61 TGCAAATTGCTCGGCAGTCTCTTCCATGACGTGTTACAAAGGGAAGTCGGCAACCCATTC 120
Query 124 ATGGAAAAAGTCGAACGCATTCGGATTCTTGCTCAGAGTGCGTTAAATTTGCGTATGGCT 183
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 ATGGAAAAAGTTGAACGCATTCGGATTCTTGCTCAGAGTGCGTTAAATTTGCGAATGGCT 180
Query 184 GGTATTGAGGATACCGCAAACCTTTTGGAGAAGCAATTGACTAGTGAAATATCCAAAATG 243
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GGTATTGAGGATACCGCAAACCTTTTGGAGAAGCAATTGACTAGTGAGATATCCAAAATG 240
Query 244 CCACTAGAAGAAGCCTTAACGTTGGCTCGTACATTCACTCATTCTCTTAACTTAATGGGC 303
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCACTAGAGGAAGCCTTAACCTTGGCTCGTACATTCACTCATTCTCTTAACTTAATGGGC 300
Query 304 ATTGCAGACACTCATCACAGAATGCACAAAGTCCATAACGTTACACAACTTGCAAGATCT 363
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 301 ATTGCAGACACTCATCACAGAATGCATAAAGTCCATAACGTTACACAACTTGCTAGATCT 360
Query 364 TGTGATGATATATTCAGCCAGCTATTGCAAAGTGGAATCTCTCCAGACGAACTTTATAAA 423
||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| ||
Sbjct 361 TGTGATGATATATTCAGTCAGCTATTGCAAAGTGGAATTTCTCCAGAGGAACTTTACAAT 420
Query 424 ACTGTTTGCAAACAGGAGGTCGAAATTGTTCTTACTGCTCATCCTACCCAAATAAATCGA 483
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 421 ACTGTTTGCAAACAGGAGGTCGAAATTGTTCTTACTGCTCATCCTACTCAAATTAATCGA 480
Query 484 AGAACCTTGCAGTACAAGCATATTAGAATTGCTCATCTTCTAGAATATAACACTAGATCA 543
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 481 AGAACCTTGCAGTACAAGCATCTTAGAATTGCTCATCTTCTAGAATATAACACCAGATCA 540
Query 544 GATCTAAGCGTTGAAGATCGCGAAACGCTCATTGAAGATTTGGTTAGAGAGATTACTTCA 603
||||| ||| |||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 541 GATCTCAGCCTTGAAGATCGCGAAACCCTCATTGAAGATTTGGTTAGAGAGATAACTTCA 600
Query 604 CTGTGGCAAACTGATGAGCTTAGACGTCAGAAACCTACTCCAGTTGATGAAGCTAGAGCT 663
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTATGGCAAACTGATGAGCTTAGACGTCAGAAACCTACTCCAGTTGATGAAGCTAGAGCT 660
Query 664 GGTCTAAACATAGTGGAGCAATCCCTTTGGAAAGCAGTACCACAATACCTGCGTCGTGTC 723
||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 661 GGTCTGAACATTGTGGAGCAATCCCTTTGGAAAGCTGTACCACATTACCTGCGTCGTGTC 720
Query 724 AGCAATTCCTTGAAGAAGTTTACAGGGAAGCCACTTCCACTAACATGCACTCCTATGAAA 783
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 721 AGCACTTCCTTGAAGAAGTTCACAGGGAAGCCACTTCCACTAACATGCACTCCTATAAAA 780
Query 784 TTTGGTTCTTGGATGGGAGGTGATAGAGATGGAAATCCAAATGTCACGGCAAAGGTCACG 843
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 781 TTTGGTTCTTGGATGGGAGGTGATAGAGATGGAAACCCAAATGTCACGGCAAAGGTCACG 840
Query 844 AAAGAAGTATCTCTCTTGTCTAGATGGATGGCTATTGATTTGTACATAAGAGAGGTTGAT 903
||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct 841 AAAGAAGTATCTCTCTTGTCTAGATGGATGGCTATCGATCTATACATAAGAGAGGTTGAT 900
Query 904 AGCTTAAGATTTGAATTATCTACGGATCGATGCAGTGATAGGTTTTCAAGATTAGCTGAT 963
||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||
Sbjct 901 AGCTTAAGATTTGAACTATCTACGGATCGATGCAGTGATAGGTTTTCAAGATTGGCAGAT 960
Query 964 AAAATTCTTGAAAAGGATTATGATAGAGGAAAATCAAATTTCCAAAAGCAACAAAGTTCA 1023
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 961 GAAATTCTTGAAAAGGATTATGATAGAGGCCAATCAAATTTCCAAAAGCAACAAAGTTCA 1020
Query 1024 TCATGCTTGCCAACACAACTTCCAGCTAGAGCTCACCTTCCTGCTTGCATTGACTTTGGT 1083
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1021 TCATCCTTGCCAACACAACTTCCAGCTAGAGCTCACCTTCCTTCTTGCATTGACTTTGGT 1080
Query 1084 GAATCACGACATACCAAATTTGAAATTGCGACGACAGATTATATGCCACCCAATCTCCAG 1143
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1081 GAATCACGACATACCAAATTCGAAATTGCGACGACAGATTATATGCCACCCAATCTTCAG 1140
Query 1144 AAGCAGAATGAACAAGACTTTTCGGAAAGCGACTGGGAGAAAATTGACAATGGTTCGCGG 1203
||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||| |
Sbjct 1141 AAGCAGAATGAACAAGACTTTCCGGAAAGCAACTGGGAGAAAACTGACAATGGTTCGCAG 1200
Query 1204 TCCGGTCTTACTTCTCGAGGTTCTTTCTCATCTACTTCTCAACTTCTTCTCCAGAGAAAA 1263
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||
Sbjct 1201 TCCGGTCTTACTTCTCGAGGTTCTTTCTCATCTACTTCTCAACTTCTTTTACAGAGGAAA 1260
Query 1264 CTATTTGAGGAATCTCAGGTTGGGAAGACTAGTTTCCAAAAGCTACTAGAACCACCTCCA 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CTATTTGAGGAATCTCAGGTTGGGAAGACTAGTTTCCAAAAGCTACTAGAACCACCTCCA 1320
Query 1324 CTTAAACGAGCTGGAAGTGCTCCTTATCGTATTGTTCTTGGAGAAGTAAAAGAAAAGCTT 1383
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1321 CTTAAACGAGCTGGAAGTGCTCCTTATCGTATTGTTCTTGGGGAAGTAAAAGAAAAGCTT 1380
Query 1384 GTGAAGACAAGAAGACTTCTTGAACTTCTTATTGAGGGTCTTCCTTGTGAGTATGACCCT 1443
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1381 GTGAAGACAAGAAGACTTCTTGAACTTCTAATTGAGGGTCTTCCTTGTGAGTATGACCCT 1440
Query 1444 AAAAACTCCTATGAAACATCAGATCAGCTTCTTGAACCATTGCTCCTCTGTTACGAATCT 1503
|||||||||||||| ||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 1441 TTAAACTCCTATGAAAAATCAGATCAACTTCTGGAACCATTGCTCCTCTGCTACGAATCT 1500
Query 1504 CTGCAATCATCGGGTGCTAGGGTACTAGCTGATGGACGACTTGCTGATCTGATTCGTAGA 1563
|| ||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 1501 CTACAATCATCGGGTGCTAGTGTACTAGCTGATGGACGACTTGCTGATCTCATCCGTAGA 1560
Query 1564 GTTTCTACCTTTGGAATGGTTTTGGTGAAACTCGACTTACGCCAGGAAGCTGCAAGACAT 1623
|||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||
Sbjct 1561 GTTTCTACCTTTGGAATGGTTTTGGTGAAACTTGATTTACGCCAGGAATCTGCAAGACAT 1620
Query 1624 TCTGAAGCTTTGGATGCAATTACAACATACTTGGATATGGGTACTTATAGTGAATGGGAT 1683
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 TCTGAAGCATTGGATGCAATTACAACATACTTGGATATGGGTACTTATAGTGAATGGGAT 1680
Query 1684 GAAGAGAAGAAATTAGAATTTTTGACAAGAGAACTAAAAGGGAAACGACCTCTTGTTCCT 1743
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1681 GAAGAGAAAAAATTAGAATTTTTGACCAGAGAACTAAAAGGGAAACGACCTCTTGTTCCT 1740
Query 1744 CAATGTATTAAGGTTGGTCCTGACGTCAAAGAAGTATTGGACACATTCCGAGTCGCTGCT 1803
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 CCATGTATTAAGGTTGGTCCTGACGTCAAAGAAGTATTGGACACATTCCGAGTCGCTGCG 1800
Query 1804 GAACTTGGAAGTGAATCACTTGGCGCTTACGTTATTTCTATGGCTTCAAATGCAAGTGAT 1863
|| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 1801 GAGCTTGGAAGTGAATCACTTGGAGCTTATGTTATTTCTATGGCTTCTAATGCAAGTGAT 1860
Query 1864 GTCCTCGCTGTGGAACTTCTTCAAAAAGATGCTCGACTTGCTTTAACTAGCGAACATGGA 1923
||||| |||||||| ||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1861 GTCCTTGCTGTGGAGCTTCTTCAAAAGGATGCTCGACTTGCTATAACTAGCGAACATGGA 1920
Query 1924 AAACCATGTCCTGGTGGAACGCTACGAGTGGTACCTCTTTTTGAAACGGTGAATGATTTA 1983
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 AAACCATGTCCCGGTGGAACGCTACGAGTGGTACCTCTTTTTGAAACGGTGAATGATTTA 1980
Query 1984 AGAGCCGCTGGTCCTTCGATAAGGAAATTGCTCTCAATCGATTGGTATAGGGAACACATC 2043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1981 AGAGCCGCTGGTCCTTCGATAAGGAAATTGCTCTCAATCGATTGGTATAGGGAACACGTC 2040
Query 2044 CAAAAGAACCACAACGGTCACCAAGAGGTGATGGTTGGATACTCTGATTCTGGAAAAGAT 2103
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2041 CAAAAGAACCACAACGGTCACCAAGAGGTAATGGTTGGATACTCTGATTCTGGAAAAGAT 2100
Query 2104 GCTGGACGTTTTACTGCAGCATGGGAACTCTACAAAGCTCAAGAAAATGTTGTTGCTGCT 2163
|||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 2101 GCTGGACGTTTTACAGCAGCATGGGAACTCTACAAAGCACAAGAAAATGTTGTGGCTGCT 2160
Query 2164 TGTAATGAATTTGGAATCAAAATAACATTATTTCATGGACGAGGAGGAAGCATTGGTCGT 2223
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2161 TGTAATGAATTTGGAATCAAAATCACATTATTTCATGGACGAGGAGGAAGCATTGGTCGT 2220
Query 2224 GGTGGTGGTCCAACCTATCTCGCTATTCAGTCCCAACCACCAGGCTCTGTAATGGGCTCT 2283
||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2221 GGTGGTGGTCCGACTTATCTCGCTATACAGTCCCAACCACCAGGCTCTGTAATGGGCTCT 2280
Query 2284 TTGCGTTCAACTGAGCAAGGTGAGATGGTTCAAGCTAAGTTTGGGATACCACAAACGGCT 2343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2281 TTGCGTTCAACTGAGCAAGGTGAGATGGTTCAAGCTAAGTTTGGGATACCACAAACGGCT 2340
Query 2344 GTTAGGCAACTAGAGGTATACACAACCGCGGTTCTACTCGCTACCTTAAAGCCTCCTCAG 2403
||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 2341 GTTAGGCAACTAGAGGTATACACAACCGCTGTTCTACTTGCTACCTTAAAACCTCCTCAG 2400
Query 2404 CCACCTCGAGAGGAAAAATGGCGAAACCTAATGGAAGAAATCTCTGGAATCAGTTGCCAA 2463
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2401 CCACCTCGAGAGGAAAAATGGCGAAACCTAATGGAAGAAATCTCTACAATCAGTTGCCAA 2460
Query 2464 CACTATAGAAGCACAGTGTATGAAAACCCAGAGTTTCTATCTTATTTTCATGAGGCAACA 2523
||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||
Sbjct 2461 CACTATAGAAGCACAGTGTATGAGAACCCAGAGTTCCTATCTTATTTTCATGAGTCAACA 2520
Query 2524 CCGCAAGCAGAACTTGGTTTCCTCAATATAGGAAGCCGACCAACACGAAGAAAGAGCTCT 2583
|| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2521 CCTCAAGCAGAACTCGGTTTCCTCAATATAGGAAGCCGACCAACGCGAAGAAAGAGCTCT 2580
Query 2584 AGTGGAATAGGACATCTCCGAGCTATCCCTTGGGTCTTTGCTTGGACTCAAACAAGGTTT 2643
|| || ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2581 AGCGGCATAGGTCATCTCCGAGCTATCCCTTGGGTCTTTGCTTGGACTCAAACAAGATTT 2640
Query 2644 GTTCTTCCAGCTTGGCTTGGTGTAGGGGCTGGTTTAAAGGGAGTTTCTGAGAAGGGTCAT 2703
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 2641 GTTCTTCCAGCTTGGCTTGGTGTAGGGGCTGGCTTAAAGGGAGTCTCTGAGAAGGGTCAT 2700
Query 2704 GCGGATGATCTTAAAGAGATGTACAAAGAATGGCCATTTTTTCAGTCCACCCTTGAACTT 2763
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2701 GCGGATGATCTTCAAGAGATGTATAAAGAATGGCCATTTTTTCAGTCCACCCTTGAACTT 2760
Query 2764 ATAGAGATGGTGTTAGCTAAAGCAGACATTCCAATGACCAAACACTACGACGAACAACTT 2823
||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 2761 ATAGAGATGGTGTTAGCTAAAGCTGACATCCCCATGACCAAACACTACGACGAACAACTT 2820
Query 2824 GTGTCTGAGAAAAGAAGAGGACTTGGCACTGAGCTAAGAAAAGAACTAATGACTACTGAG 2883
|||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||
Sbjct 2821 GTGTCTGAGAAAAGAAGAGGACTTGGCAATGAACTAAGAAAGGAACTAATGACTACTGAG 2880
Query 2884 AAGTACGTTCTTGTGATAAGTGGTCACGAGAAACTCTTGCAGGACAATAAGAGCTTGAAG 2943
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 2881 AAGTACGTTCTTGTGATAAGTGGCCACGAGAAACTCTTGCAGAACAATAAGAGCTTGAAG 2940
Query 2944 AAACTCATTGATAGTAGACTTCCGTATCTCAACGCAATGAACATGTTACAAGTTGAAATT 3003
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2941 AAACTCATTGAGAGTAGACTTCCGTATCTCAACGCAATGAACATGTTACAAGTTGAAATT 3000
Query 3004 CTTAAGAGGCTAAGACGTGATGAAGATAACAATAAGCTAAGAGATGCTTTGCTTATCACA 3063
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 3001 CTTAAGAGGCTAAGACGTGATGAAGATAATAATAAGCTTAGAGATGCTTTGCTTATCACA 3060
Query 3064 ATCAATGGTATTGCTGCAGGAATGAGAAATACCGGTTAA 3102
|| |||||||| |||||||||||||||||||||||||||
Sbjct 3061 ATTAATGGTATCGCTGCAGGAATGAGAAATACCGGTTAA 3099
> Ahg313369 jgi|Araly1|313369|fgenesh1_pm.C_scaffold_1002149
Length=3186
Score = 1812 bits (981), Expect = 0.0
Identities = 1607/1911 (84%), Gaps = 35/1911 (2%)
Strand=Plus/Plus
Query 1208 GTCTTACTTCTCGAGGTTCTTTCTCATCTACTTCTCAACTTCTTCTCCAGAGAAAACTAT 1267
|||||||| | |||||||||| ||| || | ||||||||||| | | |||| ||||||||
Sbjct 1295 GTCTTACTCCGCGAGGTTCTTCCTCCTCGAGTTCTCAACTTC-T-T-CAGAAAAAACTAT 1351
Query 1268 TTG-AGGAATCTCAGGTTGGGAAGACTAGTTTCCAAAAGCTACTAGAACCACCTCCACTT 1326
||| | || |||||| ||||| ||| ||||| || |||||| |||||||| ||||||
Sbjct 1352 TTGCA-GAGTCTCAGAATGGGAGGACCAGTTTTCAGAAGCTATTAGAACCAACTCCACCC 1410
Query 1327 AAACGAGCTGGAAGT-GCTCCTTATCGTATTGTTCTTGGAGAAGTAAAAGAAAAGCTTGT 1385
||||| ||||||| | ||||||||||| ||||||||||| |||||||| ||||||||| |
Sbjct 1411 AAACGGGCTGGAA-TAGCTCCTTATCGGATTGTTCTTGGCGAAGTAAAGGAAAAGCTTCT 1469
Query 1386 GAAGACAAGAAGACTTCTTGAACTTCTTATTGAGGGTCTTCCTTGTGAGTATGACCCTAA 1445
|||||| | |||||||| ||||||||| ||||||||||||||||||| ||||| |||
Sbjct 1470 GAAGACGCGGAGACTTCTGGAACTTCTTCTTGAGGGTCTTCCTTGTGAATATGATCCTTG 1529
Query 1446 AAACTCCTATGAAACATCAGATCAGCTTCTTGAACCATTGCTCCTCTGTTACGAATCTCT 1505
| | |||||||||||| || || ||||| ||||| | |||||||| || |||||| |
Sbjct 1530 GGATTACTATGAAACATCGGACCAACTTCTAGAACCGCTACTCCTCTGCTATGAATCTTT 1589
Query 1506 GCAATCATCGGGTGCTAGG-GTACTAGCTGATGGACGACTTGCTGATCTGATTCGTAGAG 1564
||||||||| | ||| || ||| |||||||||| || ||| | |||||||| |||||||
Sbjct 1590 GCAATCATCTGATGC-CGGAGTATTAGCTGATGGGCGGCTTTCCGATCTGATCCGTAGAG 1648
Query 1565 TTTCTACCTTTGGAATGGTTTTGGTGAAACTCGACTTACGCCAGGAAGCTGCAAGACATT 1624
|| |||||||||| |||||||| ||||||| || || ||||||||||||||||| ||||
Sbjct 1649 TTGCTACCTTTGGCATGGTTTTAATGAAACTTGATTTGCGCCAGGAAGCTGCAAGGCATT 1708
Query 1625 CTGAAGCTTTGGATGCAATTACAACATACTTGGATATGGGTACTTATAGTGAATGGGATG 1684
|||||||||||||||||||||| ||||||||||| ||||| || |||||||||||| |||
Sbjct 1709 CTGAAGCTTTGGATGCAATTACGACATACTTGGACATGGGCACATATAGTGAATGGAATG 1768
Query 1685 AAGAGAAGAAATTAGAATTTTTGACAAGAGAACTAAAAGGGAAACGACCTCTTGTTCCT- 1743
||||||||||| |||| |||||||| |||||| | |||||||||||||| ||||| |||
Sbjct 1769 AAGAGAAGAAACTAGAGTTTTTGACTAGAGAATTGAAAGGGAAACGACCCCTTGTCCCTC 1828
Query 1744 CAATGTATTAAGGTTGGTCCTGACGTCAAAGAAGTATTGGACACATTCCGAGTCGCTGCT 1803
||| |||| ||||||||||||| || ||||||||| | ||||| ||||| || ||||||
Sbjct 1829 CAA-ATATTGAGGTTGGTCCTGAAGTAAAAGAAGTACTAGACACCTTCCGGGTTGCTGCT 1887
Query 1804 GAACTTGGAAGTGAATCACTTGGCGCTTACGTTATTTCTATGGCTTCAAATGCAAGTGAT 1863
|| || ||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||
Sbjct 1888 GAGCTAGGAAGTGAATCACTTGGAGCTTACGTGATTTCCATGGCCTCAAATGCAAGTGAT 1947
Query 1864 GTCCTCGCTGTGGAACTTCTTCAAAAAGATGCTCGACTTGCTTTAACTAGCGAACATGGA 1923
|||||||||||||||||||| || ||||||||||| ||||| | | | | || | |||
Sbjct 1948 GTCCTCGCTGTGGAACTTCTGCAGAAAGATGCTCGTCTTGCCGTCAGTGGTGAGC-TGGG 2006
Query 1924 AAA-CCATGTCCTGGTGGAACGCTACGAGTGGTACCTCTTTTTGAAACGGTGAATGATTT 1982
|| |||||||||| |||||| || |||||||| |||||||||||||||||||| |||||
Sbjct 2007 AAGGCCATGTCCTGCTGGAACACTGCGAGTGGTGCCTCTTTTTGAAACGGTGAAAGATTT 2066
Query 1983 AAGAGCCGCTGG-TCCTTCGATAAGGAAATTGCTCTCAATCGATTGGTATAGGGAACACA 2041
||||| ||||| ||| | ||| || |||||||| |||||||||||||| || |||||||
Sbjct 2067 AAGAGATGCTGGCTCCGT-GATTAGAAAATTGCTATCAATCGATTGGTACAGAGAACACA 2125
Query 2042 TCCAAAAGAACCACAACGGTCACCAAGAGGTGATGGTTGGATACTCTGATTCTGGAAAAG 2101
||||||||||||||| ||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 2126 TCCAAAAGAACCACACCGGCCACCAAGAGGTGATGGTTGGATATTCGGATTCTGGAAAAG 2185
Query 2102 ATGCTGGACGTTTTACTGCAGCATGGGAACTCTACAAAGCTCAAGAAAATGTTGTTGCTG 2161
|||||||||| ||| ||||||||||||||||||||||||| || || ||||||| ||||
Sbjct 2186 ATGCTGGACGATTTGCTGCAGCATGGGAACTCTACAAAGCCCAGGAGGATGTTGTGGCTG 2245
Query 2162 CTTGTAATGAATTTGGAATCAAAATAACATTATTTCATGGACGAGGAGGAAGCATTGGTC 2221
|||| |||||||||||||||||||| || ||||| |||||||||||||| || ||||| |
Sbjct 2246 CTTGCAATGAATTTGGAATCAAAATTACCTTATTCCATGGACGAGGAGGCAGTATTGGCC 2305
Query 2222 GTGGTGGTGGTCCAACCTATCTCGCTATTCAGTCCCAACCACCAGGCTCTGTAATGGGCT 2281
| |||||||| ||||| ||||| || || || |||||||| ||||| ||||||||||| |
Sbjct 2306 GAGGTGGTGGCCCAACTTATCTTGCCATACAATCCCAACCTCCAGGGTCTGTAATGGG-T 2364
Query 2282 -CTTTGCGTTCAACTGAGCAAGGTGAGATGGTTCAAGCTAAGTTTGGGATACCACAAACG 2340
|| | ||||| || |||||||| |||||||| ||||| ||||||||| ||||||| |||
Sbjct 2365 ACTCTCCGTTCCACAGAGCAAGGCGAGATGGTGCAAGCCAAGTTTGGGCTACCACAGACG 2424
Query 2341 GCTGTTAGGCAACTAGAGGTATACACAACCGCGGTTCTACTCGCTACCTTAAAGCCTCCT 2400
||||||||||| |||||| | ||||||||||| || || || ||||| || ||||||||
Sbjct 2425 GCTGTTAGGCAGCTAGAGATTTACACAACCGCAGTGCTGCTTGCTACATTGCAGCCTCCT 2484
Query 2401 CAGCCACCTCGAGAGGAAAAATGGCGAAACCTAATGGAAGAAATCTCTGGA-ATCAGTTG 2459
|||||||| |||| || |||||||| | |||||||||||| ||||| | ||||| ||
Sbjct 2485 CAGCCACCAAGAGAAGAGAAATGGCGGAGCCTAATGGAAGATATCTCAA-ACATCAGCTG 2543
Query 2460 CCAACACTATAGAAGCACAGTGTATGAAAACCCAGAGTTTCTATCTTATTTTCATGAGGC 2519
|||| |||| || ||||| || |||||||||||||| || || || || || || |||||
Sbjct 2544 CCAAAACTACAGGAGCACGGTCTATGAAAACCCAGAATTCCTCTCCTACTTCCAAGAGGC 2603
Query 2520 AACACCGCAAGCAGAACTTGGTTTCCTCAATATAGGAAGCCGACCAACACGAAGAAAGAG 2579
|||||| || || || || ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 2604 AACACCTCAGGCCGAGCTCGGTTTCCTCAACATAGGAAGCCGGCCAACACGAAGAAAGAG 2663
Query 2580 CTC-T-AGTGGAATAGGACATCTCCGAGCTATCCCTTGGGTCTTT-GCTTGGACTCAAAC 2636
||| | || ||| | ||||||||| |||||||||||||||| ||| || ||||| || ||
Sbjct 2664 CTCATCAG-GGATT-GGACATCTCAGAGCTATCCCTTGGGT-TTTCGCCTGGACACAGAC 2720
Query 2637 AAGGTTTGTTCTTCCAGCTTGGCTTGGTGTAGGGGCTGGTTT-AAAGGGAGTTTCTGAGA 2695
||||||||| |||||||||||||| |||||||| |||||| | ||||| ||| | |||||
Sbjct 2721 AAGGTTTGTCCTTCCAGCTTGGCTCGGTGTAGGAGCTGGTCTGAAAGG-AGTCTGTGAGA 2779
Query 2696 AGGGTCATGCGGATGATCTTAAAG-AGATGTACAAAGAATGGCCATTTTTTCAGTCCACC 2754
||||||| || ||||| || ||| | ||||||||||||||||| || |||||||| |||
Sbjct 2780 AGGGTCACGCTGATGACCTCCAAGCA-ATGTACAAAGAATGGCCCTTCTTTCAGTCGACC 2838
Query 2755 CTTGAACTTATAGAGATGGTGTTAGCTAAAGCAGACATTCCAAT-GACCAAACACTACGA 2813
| || ||||||||||||||||||||||||||||| || ||||| | |||||||||||||
Sbjct 2839 ATAGACCTTATAGAGATGGTGTTAGCTAAAGCAGATATCCCAATAG-CCAAACACTACGA 2897
Query 2814 CGAACAACTTGTGTCTGAGAAAAGAAGAGGACTTGGCACTGAGCTAAGAAAAGAACTAAT 2873
||| | ||||| || ||||| ||||||||| |||| | |||||| ||||| ||| | |
Sbjct 2898 TGAAGAGCTTGTCTCAGAGAACAGAAGAGGAATTGGTAGTGAGCTCAGAAAGGAATTGCT 2957
Query 2874 GACTACTGAGAAGTACGTTCTTGTGATAAGTGGTCACGAGAAA-CTCTTGCAGGACAATA 2932
||| ||||||||||| || ||||||||||| ||||| | |||| |||| | || ||||
Sbjct 2958 GACGACTGAGAAGTATGTGCTTGTGATAAGCGGTCATG-GAAAGCTCTCGGAGAACAACC 3016
Query 2933 AGAGCTTGAAGAAA-CTCATTGATAGTAGACTTCCGTATCTCAACGCAATGAACATGTTA 2991
|||| |||| ||| || || || ||||||||||||||||| ||| | ||||||||| |
Sbjct 3017 GGAGCCTGAA-AAAGCTGATAGAGAGTAGACTTCCGTATCTGAACCCCATGAACATGCTG 3075
Query 2992 CAAGTTGAAATTCTTAAGAGGCTAAGACGTGATGAAGATAACAATAAGCTAAGAGATGCT 3051
|| || || || || |||||||||||||||||||| || ||||| ||||| || |||||
Sbjct 3076 CAGGTAGAGATCCTCAAGAGGCTAAGACGTGATGACGACAACAACAAGCTCAGGGATGCA 3135
Query 3052 TTGCTTATCACAATCAATGGTATTGCTGCAGGAATGAGAAATACCGGTTAA 3102
||||| ||||| || || |||||||| || || ||||| || || ||||||
Sbjct 3136 TTGCTCATCACCATTAACGGTATTGCAGCTGGCATGAGGAACACTGGTTAA 3186
Score = 941 bits (509), Expect = 0.0
Identities = 829/984 (84%), Gaps = 20/984 (2%)
Strand=Plus/Plus
Query 4 ATGACGGACACAACAGACGATATCGCAGAGGAAATCTCATTCCAAAGCTTCGAAGATGAC 63
|||||||| || || ||||||||||||||||| || || || || |||||||| ||||||
Sbjct 1 ATGACGGATACGACGGACGATATCGCAGAGGAGATTTCGTTTCAGAGCTTCGAGGATGAC 60
Query 64 TGCAAATTGCTCGGTAGTCTCTTCCATGATGTGTTACAAAGGGAAGTTGGCAACCCA-TT 122
|| ||||||||||| ||||||||| | || || || || || ||||| || ||| | ||
Sbjct 61 TGTAAATTGCTCGGAAGTCTCTTCAACGACGTCTTGCAGAGAGAAGTCGG-TACCGATTT 119
Query 123 CATGGA-AAAAGTCGAACGCATTCGGATTCTTGCTCAGAGTGCGTTAAAT-TTGCGTATG 180
|||||| |||| ||||||| | ||||||||| ||||||||||| |||||| || ||| ||
Sbjct 120 CATGGAGAAAA-TCGAACGGACTCGGATTCTCGCTCAGAGTGCTTTAAATCTT-CGTTTG 177
Query 181 GCTGGTATTGAGGATACCGCAAACCTTTTGGAGAAGCAATTGACTAGTGAAATATCCAAA 240
||||||||||| ||||| ||| | ||||||||||||||||||||| |||||||| ||||
Sbjct 178 GCTGGTATTGAAGATACGGCAGAGCTTTTGGAGAAGCAATTGACTTCTGAAATAT-CAAA 236
Query 241 -ATGCCACTAGAAGAAGCCTTAACGTTGGCTCGTACATTCA-CTCATTCTCTTAACT-TA 297
||| |||| || ||||| || || |||||||| | |||| | |||| ||| || | |
Sbjct 237 GATGTCACTGGAGGAAGCATTGACACTGGCTCGTGCGTTCAGC-CATTTTCTGAA-TCTG 294
Query 298 ATGGGCATTGCAGACACTCATCACAGAATGCACAAAGTCCATAACGTTACACAACTTGCA 357
||||||||||| || || ||||||||| | | |||||| ||||||| |||||||| ||
Sbjct 295 ATGGGCATTGCCGAAACCCATCACAGAGTTCGTAAAGTCTGTAACGTTCCACAACTTTCA 354
Query 358 AGATCTTGTGATGATATATTCAGCCAGCTATTGCAAAGTGGAATCTCTCCAGACGAACTT 417
||||| || | ||| ||||||| ||||||||||| ||||||| || ||||| || |||
Sbjct 355 AGATCATGCAACGATGTATTCAGTAAGCTATTGCAAGGTGGAATTTCCCCAGATGAGCTT 414
Query 418 TATAAAACTGTTTGCAAACAGGAGGTCGAAATTGTTCTTACTGCTCATCCTACCCAAATA 477
|| | || |||||||| ||||| || ||||||||||||||||| || || || |||||
Sbjct 415 TACGACACAGTTTGCAAGCAGGAAGTTGAAATTGTTCTTACTGCGCACCCCACTCAAATC 474
Query 478 AATCGAAGAACCTTGCAGTACAAGCATATTAGAATTGCTCATCTTCTAGAATATAAC-AC 536
||||| |||| ||||||||||| ||||||||||| ||||||||||||||||| ||| |
Sbjct 475 AATCGGCGAACTTTGCAGTACAAACATATTAGAATGGCTCATCTTCTAGAATACAACGA- 533
Query 537 TAGATCAGATCTAAG-CGTTGAAGATCGCGAAACGCTCATTGAAGATTTGGTTAGAGAGA 595
|||| |||| || | | |||||||||| |||||| | ||||| ||| ||||||| ||||
Sbjct 534 TAGACCAGACCTTGGAC-TTGAAGATCGAGAAACGGTTATTGAGGATCTGGTTAGGGAGA 592
Query 596 TTACTTCACTGTGGCAAACTGATGAGCTTAGACGTCAGAAACCTACTCCAGTTGATGAAG 655
| |||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 593 TAACTTCACTGTGGCAGACTGATGAACTTAGACGTCAGAAACCTACTCCTGTTGATGAAG 652
Query 656 CTAGAG-CTGGTCTAAACATAGTGGAGCAATCCCTTTGGAAAGCAGTACCACAATACCTG 714
|||| | ||||||| ||||| || |||||||| ||||||||||| |||||||| ||| ||
Sbjct 653 CTAG-GTCTGGTCTGAACATTGTTGAGCAATCTCTTTGGAAAGCTGTACCACATTACTTG 711
Query 715 CGTCGTGTCAGCAATTCCTTGAAGAAGTTTACAGGGAAGCCACTTCCACTAACATGCACT 774
||||||||||||| ||| ||||||||| | || ||||| ||||| ||| |||| |||||
Sbjct 712 CGTCGTGTCAGCAGTTCTTTGAAGAAGCTCACGGGGAAACCACTCCCATTAACTTGCACC 771
Query 775 CCTATGAAA-TTTGGTTCTTGGATGGGAGGTGATAGAGATGGAAATCCAAATGTCACGGC 833
|| || ||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 772 CCAAT-AAAGTTTGGTTCCTGGATGGGTGGTGATAGAGATGGAAATCCAAATGTCACGGC 830
Query 834 AAAGGTCACGAAAGAAGTATCTCTCTTGTCTAGATGGATGGCTATTGATTTGTACATAAG 893
||||||||| ||||||||||| ||| ||||||||||||||||||||||| ||||||||||
Sbjct 831 AAAGGTCACCAAAGAAGTATCGCTCATGTCTAGATGGATGGCTATTGATCTGTACATAAG 890
Query 894 AGAGGTTGATAGCTTAAGATTTGAATTATCTACGGATCGATGCAGTGATAGGTTTTCAAG 953
|||| | |||||||||||||||||||| |||| | |||||||||| ||||| || || ||
Sbjct 891 AGAGATCGATAGCTTAAGATTTGAATTGTCTATGAATCGATGCAGCGATAGATTGTCCAG 950
Query 954 ATTAGCTGATAAAATTCTTGAAAA 977
||| || ||| |||||||||||||
Sbjct 951 ATTGGCAGATGAAATTCTTGAAAA 974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117165593620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5