BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G68760.1 Length=698 Score E Sequences producing significant alignments: (Bits) Value Ahg476003 jgi|Araly1|476003|fgenesh2_kg.2__1133__AT1G68760.1 992 0.0 Ahg477343 jgi|Araly1|477343|fgenesh2_kg.3__44__AT3G01710.2 121 9e-27 > Ahg476003 jgi|Araly1|476003|fgenesh2_kg.2__1133__AT1G68760.1 Length=627 Score = 992 bits (537), Expect = 0.0 Identities = 598/628 (95%), Gaps = 1/628 (0%) Strand=Plus/Plus Query 1 AACAAAACTAAAACACGACAAGAAAGGGTTTCACTGTGTTCGATAATAATGTCGACAGGA 60 ||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||| | Sbjct 1 AACAAAAGTAAAACACGACAAGAAAGGGTTTCACTGTGTTCGGCAATAATGGCGACAGAA 60 Query 61 GAAGCGATACCAAGAGTCGCCGTCGTCGTTTTCATTCTCAACGGAAACTCAATCTTATTA 120 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 61 GAAGCGATACCAAGAGTCGCCGTCATCGTTTTCATTCTCAACGGAAACTCAATCTTATTA 120 Query 121 GGTCGCCGCCGTTCCTCAATCGGCAACTCCACTTTCGCTCTTCCCGGTGGCCACCTCGAA 180 |||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 121 GGTCGCCGACGTTCCTCAATCGGAAACTCCACTTTCGCTCTTCCCGGCGGCCACCTCGAA 180 Query 181 TTCGGAGAGAGCTTTGAAGAATGTGCAGCGAGAGAAGTAATGGAGGAAACAGGTCTAAAG 240 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTCGGTGAGAGCTTTGAAGAATGTGCAGCGAGAGAAGTAATGGAGGAAACAGGTCTAAAG 240 Query 241 ATTGAAAAGATGAAGCTTTTGACTGTTACAAACAATGTCTTCAAAGAAGCACCAACGCCA 300 |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 241 ATTGAAAAGATGAAGCTTTTGACTGTAACAAACAATGTCTTCAAAGAAGCACCAAAGCCA 300 Query 301 TCACACTACGTCTCTGTTTCGATACGTGCGGTGTTGGTGGATCCAAGTCAAGAACCGAAG 360 ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 301 GCACACTACGTCACTGTTTCGATGCGTGCGGTGTTGGTGGATCCAAGTCAAGAACCGAAG 360 Query 361 AATATGGAACCAGAGAAGTGTGAAGGATGGGATTGGTATGATTGGGAGAATCTACCAAAG 420 ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 361 AATATGGAACCGGAGAAGAGTGAAGGATGGGATTGGTATGATTGGGAGAATCTACCAAAG 420 Query 421 CCTTTGTTTTGGCCACTTGAGAAATTGTTTGGAAGTGGTTTCAATCCTTTCACTCATGGT 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CCTTTGTTTTGGCCACTTGAGAAATTGTTTGGAAGTGGTTTCAATCCTTTCACTCATGGT 480 Query 481 GGTGGAGACTAATAGATGTAAGAGTTAATGATTGATTTGGGATTGAATGTTGCAAATTGG 540 |||||||||| ||||||||| |||| ||| ||||||||| || |||||| |||||| || Sbjct 481 GGTGGAGACTGATAGATGTATGAGTAAATTATTGATTTGTGACTGAATGCTGCAAAAAGG 540 Query 541 GCATTTGGTCTAGTGGTATGATTCTCGCTTAGGGTGCGAGAGGTCCCGAGTTCAATTCTC 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GCATTTGGTCTAGTGGTATGATTCTCGCTTAGGGTGCGAGAGGTCCCGAGTTCAATTCTC 600 Query 601 GGAATGCCCCTCTCttttactctttttt 628 |||||||||||||| ||| || ||||| Sbjct 601 GGAATGCCCCTCTCACTTA-TCCTTTTT 627 > Ahg477343 jgi|Araly1|477343|fgenesh2_kg.3__44__AT3G01710.2 Length=1437 Score = 121 bits (65), Expect = 9e-27 Identities = 70/72 (97%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 547 GGTCTAGTGGTATGATTCTCGCTTAGGGTGCGAGAGGTCCCGAGTTCAATTCTCGGAATG 606 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1437 GGTCTAGTGGTATGATTCTCGCTTAGGGTGCGAGAGGTCCCGAGTTCAATTCTCGGAATG 1378 Query 607 CCCCTCTCtttt 618 |||| || |||| Sbjct 1377 CCCC-CTTTTTT 1367 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25656723141 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5