BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68760.1
Length=698
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476003 jgi|Araly1|476003|fgenesh2_kg.2__1133__AT1G68760.1 992 0.0
Ahg477343 jgi|Araly1|477343|fgenesh2_kg.3__44__AT3G01710.2 121 9e-27
> Ahg476003 jgi|Araly1|476003|fgenesh2_kg.2__1133__AT1G68760.1
Length=627
Score = 992 bits (537), Expect = 0.0
Identities = 598/628 (95%), Gaps = 1/628 (0%)
Strand=Plus/Plus
Query 1 AACAAAACTAAAACACGACAAGAAAGGGTTTCACTGTGTTCGATAATAATGTCGACAGGA 60
||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||| |
Sbjct 1 AACAAAAGTAAAACACGACAAGAAAGGGTTTCACTGTGTTCGGCAATAATGGCGACAGAA 60
Query 61 GAAGCGATACCAAGAGTCGCCGTCGTCGTTTTCATTCTCAACGGAAACTCAATCTTATTA 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGCGATACCAAGAGTCGCCGTCATCGTTTTCATTCTCAACGGAAACTCAATCTTATTA 120
Query 121 GGTCGCCGCCGTTCCTCAATCGGCAACTCCACTTTCGCTCTTCCCGGTGGCCACCTCGAA 180
|||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 121 GGTCGCCGACGTTCCTCAATCGGAAACTCCACTTTCGCTCTTCCCGGCGGCCACCTCGAA 180
Query 181 TTCGGAGAGAGCTTTGAAGAATGTGCAGCGAGAGAAGTAATGGAGGAAACAGGTCTAAAG 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCGGTGAGAGCTTTGAAGAATGTGCAGCGAGAGAAGTAATGGAGGAAACAGGTCTAAAG 240
Query 241 ATTGAAAAGATGAAGCTTTTGACTGTTACAAACAATGTCTTCAAAGAAGCACCAACGCCA 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 241 ATTGAAAAGATGAAGCTTTTGACTGTAACAAACAATGTCTTCAAAGAAGCACCAAAGCCA 300
Query 301 TCACACTACGTCTCTGTTTCGATACGTGCGGTGTTGGTGGATCCAAGTCAAGAACCGAAG 360
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 GCACACTACGTCACTGTTTCGATGCGTGCGGTGTTGGTGGATCCAAGTCAAGAACCGAAG 360
Query 361 AATATGGAACCAGAGAAGTGTGAAGGATGGGATTGGTATGATTGGGAGAATCTACCAAAG 420
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AATATGGAACCGGAGAAGAGTGAAGGATGGGATTGGTATGATTGGGAGAATCTACCAAAG 420
Query 421 CCTTTGTTTTGGCCACTTGAGAAATTGTTTGGAAGTGGTTTCAATCCTTTCACTCATGGT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCTTTGTTTTGGCCACTTGAGAAATTGTTTGGAAGTGGTTTCAATCCTTTCACTCATGGT 480
Query 481 GGTGGAGACTAATAGATGTAAGAGTTAATGATTGATTTGGGATTGAATGTTGCAAATTGG 540
|||||||||| ||||||||| |||| ||| ||||||||| || |||||| |||||| ||
Sbjct 481 GGTGGAGACTGATAGATGTATGAGTAAATTATTGATTTGTGACTGAATGCTGCAAAAAGG 540
Query 541 GCATTTGGTCTAGTGGTATGATTCTCGCTTAGGGTGCGAGAGGTCCCGAGTTCAATTCTC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCATTTGGTCTAGTGGTATGATTCTCGCTTAGGGTGCGAGAGGTCCCGAGTTCAATTCTC 600
Query 601 GGAATGCCCCTCTCttttactctttttt 628
|||||||||||||| ||| || |||||
Sbjct 601 GGAATGCCCCTCTCACTTA-TCCTTTTT 627
> Ahg477343 jgi|Araly1|477343|fgenesh2_kg.3__44__AT3G01710.2
Length=1437
Score = 121 bits (65), Expect = 9e-27
Identities = 70/72 (97%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 547 GGTCTAGTGGTATGATTCTCGCTTAGGGTGCGAGAGGTCCCGAGTTCAATTCTCGGAATG 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 GGTCTAGTGGTATGATTCTCGCTTAGGGTGCGAGAGGTCCCGAGTTCAATTCTCGGAATG 1378
Query 607 CCCCTCTCtttt 618
|||| || ||||
Sbjct 1377 CCCC-CTTTTTT 1367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25656723141
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5