BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G68765.1

Length=536
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg476004 jgi|Araly1|476004|fgenesh2_kg.2__1134__AT1G68765.1         540    4e-153


> Ahg476004 jgi|Araly1|476004|fgenesh2_kg.2__1134__AT1G68765.1
Length=465

 Score =  540 bits (292),  Expect = 4e-153
 Identities = 395/442 (89%), Gaps = 18/442 (4%)
 Strand=Plus/Plus

Query  35   TTACTCaaagaagtggaagtgaaaaaat-tagaaaaagagaagaaaaaaaaCATTGACTA  93
            ||||| |||||||||||||||   |||| ||| |||| || || ||||| ||||||| ||
Sbjct  1    TTACTTAAAGAAGTGGAAGTG---AAATCTAG-AAAA-AG-AG-AAAAAGACATTGATTA  53

Query  94   CCAAATGGCTCCGTGTCGTACGATGATGGTTCTGCTCTGTTTTGTTCTGTTTCTCGCGGC  153
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |  
Sbjct  54   CCAAATGGCTCCGTGTCGTAGGATGATGGTTCTGCTCTGTTTTGTTCTGTTTCTGGTGAT  113

Query  154  GAGTAGTTCTTGTGTAGCGGCTGCAAGAATTGGAGCCACCATGGAGATGAAGAAGAATAT  213
            || |||||||||||  |||||||||||||| |||||||| | ||||||||||||||||| 
Sbjct  114  GAATAGTTCTTGTGCGGCGGCTGCAAGAATCGGAGCCACGACGGAGATGAAGAAGAATAG  173

Query  214  AAAGAGATTAACG-TTTAAAAACAGCCATATTTTTGGTTACTTACCTAAAGGCGTTCCCA  272
            |||||| || | |  ||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct  174  AAAGAGCTT-AGGAGTTAAATACAACCATATTTTTGGTTACTTACCTAAAGGCGTTCCCA  232

Query  273  TTCCTCCTTCTGCTCCTTCTAAGAGACACAACTCTTTTGTTAACTCTCTTCCTCATTGAT  332
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  233  TTCCTCCTTCTGCTCCTTCTAAGAGACACAACTCTTTTGTTGACTCTCTTCCTCATTGAT  292

Query  333  TTCATTTT-ATTTTATTCATTGTATTCTTTTAGGTTTGGTTTTGTAGATTAGATCAACAT  391
            |||||||| |||| ||||||||||||||||| ||||| |||||||||||||||| |||||
Sbjct  293  TTCATTTTGATTT-ATTCATTGTATTCTTTTGGGTTTTGTTTTGTAGATTAGATTAACAT  351

Query  392  AGGGTATTATACTCTTTGTATATGCATACGATTTATATTTACTTTTGAATTTGTTCCTTT  451
            ||||||| |  |||||| |||||||||||||||||||| |||||| ||||||| ||||||
Sbjct  352  AGGGTAT-A--CTCTTTTTATATGCATACGATTTATATATACTTTGGAATTTGATCCTTT  408

Query  452  TTATGTTTATAGA-CTTAATAT  472
            ||||| |||| || || |||||
Sbjct  409  TTATGATTAT-GAACT-AATAT  428



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19535661568


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5