BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68780.1
Length=1886
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476005 jgi|Araly1|476005|fgenesh2_kg.2__1135__AT1G68780.1 2708 0.0
> Ahg476005 jgi|Araly1|476005|fgenesh2_kg.2__1135__AT1G68780.1
Length=1849
Score = 2708 bits (1466), Expect = 0.0
Identities = 1698/1808 (94%), Gaps = 24/1808 (1%)
Strand=Plus/Plus
Query 12 AAGATCCTTTACATTTTCTTTAAGTCTTTATCAAATACTTGTCATATTGTAGATTCTTAT 71
||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 1 AAGATCCTTTACATTTTCTTTTTGTATTTATCAAATATTTGTCATATTGTAGATTCTTAT 60
Query 72 ATAGGTGTCTATATACATGCACATAAAGCTGTGTAATATGTAATCATAAGTTAGAGAAAC 131
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATAGGTGTCTATATCCATATACATAAAGCTGTGTAATATGTAATCATAAGTTAGAGAAAC 120
Query 132 AGATTTGGCTTTTCCTCTCTTGTTCTCTGTTGAGTATTCTTCTTGGCATCTCCTCTATAT 191
|||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||
Sbjct 121 AGATTTGGCTTTTCCTCTCTTGTTCTCTGTTGTGTCTTCTTCTTGGCATTTCCTCTATAA 180
Query 192 TAAACTCGAAAGAGAAACAAAACAGAGAAACCTCTAAAGCTTTCT-T-TTTTGTTCTCAT 249
||||| | ||||||||||||||||||||||||||||||||||||| | |||| |||| ||
Sbjct 181 TAAACCCTAAAGAGAAACAAAACAGAGAAACCTCTAAAGCTTTCTCTCTTTTTTTCTAAT 240
Query 250 GACATTTTCTTGTCACAAACCAAACTCGAGAAGAAAAGTTCTTGTATACAAATCAACCAA 309
|| |||||||||||||||||||||||| | ||||||| |||||||||||||||||||||
Sbjct 241 GAAATTTTCTTGTCACAAACCAAACTCTATAAGAAAAAATCTTGTATACAAATCAACCAA 300
Query 310 CATTCATTGTTTTTAAAAGGGTCCCATGACCCA-TTGTGGAGATAGCTTTGTTTTCATCT 368
||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||
Sbjct 301 CATTCATTGTTTTTAAAAGGGTCCCATGACCCATTTGTGGTGATAGCTTTGTTTTTATCT 360
Query 369 TCCAACATTAACACCCACCCCAAAATCTTGATT-ACTTTTGATAGAAACATATGCAACAA 427
|||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 361 TCCAACATTAACACCCACCCCAAATTCTTGATTAACCTTTGATAGAAACATATGCAACAA 420
Query 428 GTGGAATAATTCCAATACAGATAAGATCCACACAACACTTTTTTCTCCTTCTATTCTCTT 487
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 CTTGAATAATTCCAATACAGATAAGATCCACACAACAC-TTTTTCTCCTTCTATTCTCTT 479
Query 488 GTATCTTCTCATTATAGTCTCGATGAAGATGCTGAGACTT-AGAAAGAAGCAACATTTGG 546
| | ||| | |||| ||||||||||| ||| || || ||||||||||||||||
Sbjct 480 G-------T-ATT-T--TCTCAATGAAGATGCTTAGA-TTAAGGAAGAAGCAACATTTGG 527
Query 547 TGTTTCTACTATGCGTGTGGTGTTTGGTGGTGGATTGGAGCAAAGCAGAAACAGAGGAAA 606
||||| ||||||| |||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 528 TGTTTTTACTATGTGTGTGGTGTTTGGTGGTGGATTTGAGCAAGGCAGAAACAGAGGAAA 587
Query 607 GTGATGGAAGTCCCATGGAGAAAACAGAGCAAGCTGCTCTATACTCTACCATTCAAGGCT 666
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 GTGAAGGAGGTCCCATGGAGAAAACAGAGCAAGCTGCTCTATACTCTACCATTCAAGGCT 647
Query 667 TTGTTGGTGAATCTTGGAATGGCTCTTATCTTTATCCTGACCCTTGTGGCTGGACTCCTA 726
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 648 TTGTTGGTGAATCTTGGAATGGTTCTTATCTTTATCCTGACCCTTGTGGCTGGACTCCCA 707
Query 727 TCCAGGGTGTGACTTGTGATATCTATGATGAGCTTTGGTATGTAACTGCTCTAAGCTTTG 786
| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 708 TACAGGGTGTGACTTGTGATATGTATGATGATCTTTGGTATGTAACTGCTCTAAGCTTTG 767
Query 787 GGACTATGAAAGACAACTCTCTTGCTTGTTCTGAAAGTCCAGTGATCAGACCACAACTCT 846
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 768 GGACTATGAAAGACAACTCTCTTGCTTGTTCTGAAATTCCAGTGATCAGACCACAACTCT 827
Query 847 TTGAGCTCAAGCACCTCAAGTCTCTCTCTCTTTTCAACTGCTTCACAACGCC-TAACCGA 905
|||||||||||||||||||||| || ||||||||||||||||||||| |||| || ||||
Sbjct 828 TTGAGCTCAAGCACCTCAAGTCCCTTTCTCTTTTCAACTGCTTCACATCGCCATA-CCGA 886
Query 906 TATCTAGCTTCAATCTCCGATGAAAAGTGGTTGGATCTCTCTAAAAGCTTGGAGAGACTT 965
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 887 TATCTAGCTTCAATCTCGGATGAGAAGTGGTTGGATCTCTCTAAAAGCTTGGAGAGGCTT 946
Query 966 GAGATCAGATCAAACCCGGGACTGATAGGTGAACTCCCTTCTGTCATCACTAACCTCACC 1025
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 947 GAGATCAGATCAAACCCGGGACTGATAGGTGAACTTCCTTCTGTCATCACTAACCTCACC 1006
Query 1026 AACCTTCAATCTCTGGTGGTGCTAGAAAA-CAAGTTAACAGGTCCATTGCCAGTGAATTT 1084
|||||||||||||||||||||||||| || || |||||||||||||||||||| ||||||
Sbjct 1007 AACCTTCAATCTCTGGTGGTGCTAGAGAATCA-GTTAACAGGTCCATTGCCAGAGAATTT 1065
Query 1085 GGCCAAGTTAACCAGATTGAGACGTTTAGTACTGTCTGGAAACCGGTTCACAGGGAGAAT 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 GGCCAAGTTAACCAGATTGAGACGTTTAGTACTGTCTGGAAACCGGTTCACAGGGAGAAT 1125
Query 1145 ACCTGAGGTCTACGGGTTAACCGGATTGTTGATATTGGATGTGAGCAGGAATTTCTTATC 1204
||| ||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1126 ACCGGAGGTCTACGGCTTAACCGGATTGTTGATATTGGATCTGAGCCGGAATTTCTTATC 1185
Query 1205 TGGGGCGTTGCCTTTAAGCGTTGGAGGATTGTATTCTCTGCTGAAACTTGATCTTAGTAA 1264
|| ||||||| |||||| ||||||||||| |||||||||||||||| |||||||||||
Sbjct 1186 CGGTTCGTTGCCCTTAAGCATTGGAGGATTGGATTCTCTGCTGAAACTCGATCTTAGTAA 1245
Query 1265 CAATTACTTGGAAGGAAAGTTACCTAGAGAGCTAGAGTCCTTGAAGAATCTCACTCTATT 1324
||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||
Sbjct 1246 CAATTACTTGGAAGGAAAGTTACCTAGAGAGCTAGAGTCTTTAAAGAATCTGACTCTTTT 1305
Query 1325 GGACTTGAGAAACAACAGATTATCAGGTGGGTTGAGTAAAGAGATCCAAGAGATGACTTC 1384
|||| |||||||||||||||| |||||||| |||| |||||| |||||||||||||||||
Sbjct 1306 GGACCTGAGAAACAACAGATTCTCAGGTGGATTGACTAAAGATATCCAAGAGATGACTTC 1365
Query 1385 TTTGGTAGAACTGGTTCTGTCCAATAATCGCCTAGCCGGGGACTTGACAGGAATAAAGTG 1444
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1366 TTTGGTAGAACTGGTTCTGTCCAATAATCGCCTAGCCGGGGACTTGACAGGAATAGAGTG 1425
Query 1445 GAGAAATCTGAAGAATTTAGTGGTTCTTGATCTCTCCAACACAGGCTTAAAAGGGGAGAT 1504
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1426 GAGAAATCTGAAGAATTTAGTGGTTCTTGATCTCTCCAAAACAGGCTTAAAAGGGGAGAT 1485
Query 1505 TCCTGGTTCAATCTTGGAGCTCAAGAAACTGAGGTTTTTGGGTTTGAGCAACAACAATCT 1564
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1486 TCCTGGTTCAATCTTGGAGCTCAAGAAACTGAGGTTTTTGGGCTTGAGCAACAACAATCT 1545
Query 1565 CGGAGGCAAACTCATTCCACAAATGGAAACCGAAATGCCTAGTCTCAGCGCGCTTTACGT 1624
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1546 CGGAGGCAAACTCATTCCACAAATGGAAACTGAAATGCCTAGTCTCAGCGCGCTCTACGT 1605
Query 1625 GAATGGAAATAACATCAGCGGAGAGTTGGAATTCTCTAGGTACTTTTATGAGA-GAATGG 1683
|||||||||||||||||| |||||| |||| |||||||| | || ||||||| || |||
Sbjct 1606 GAATGGAAATAACATCAGTGGAGAGCTGGAGTTCTCTAGAAAGTTCTATGAGAAGA-TGG 1664
Query 1684 GAAGGAGACTTGGTGTTTGGGGGAACCCTAATCTGTGTTACAACGGAGATGAGACCAAGA 1743
||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||
Sbjct 1665 GAAGGAGACTTGGTGTTTGGGGGAACCCTAACCTGTGTTACAACGGAAATGAGATCAAGA 1724
Query 1744 ACCTTAGCGATCATGTTCCTTTCGGAGTGAACCAATGTAAGAGAATTAAGGCAGATAAAT 1803
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1725 ACCTTAGCGATCATGTTCCTTTCGGAGTGAACCAGTGTAAGAGAATTAAGGCAGATAAAT 1784
Query 1804 ATTAGAAC 1811
||||||||
Sbjct 1785 ATTAGAAC 1792
Score = 56.5 bits (30), Expect = 7e-07
Identities = 35/37 (95%), Gaps = 1/37 (3%)
Strand=Plus/Plus
Query 1846 AACTTGG-AATGATACAAAGCTGTGGTCTTTTCAATT 1881
|| |||| |||||||||||||||||||||||||||||
Sbjct 1813 AATTTGGAAATGATACAAAGCTGTGGTCTTTTCAATT 1849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70847855700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5