BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G68795.1

Length=798
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg908458 jgi|Araly1|908458|Al_scaffold_0002_1539                    473    7e-133


> Ahg908458 jgi|Araly1|908458|Al_scaffold_0002_1539
Length=366

 Score =  473 bits (256),  Expect = 7e-133
 Identities = 331/366 (90%), Gaps = 9/366 (2%)
 Strand=Plus/Plus

Query  218  ATGCTTAGAATTTCTTCATCATCTTCCATGGCCTTGAAATTTTCTCAAATTCTCTTCATA  277
            ||||||||| ||||||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct  1    ATGCTTAGACTTTCTTCATCATCTTCCATGGCCTTAAAATTCTCTCAAATCCTCTTCATA  60

Query  278  GTTTTATGGCTATCTCTCTTCTTTCTCCTCCTCCACCACTTGTACTCCCTCAACTTCCGT  337
            ||| ||||||| |||||||| || ||||||||||||||||| |||||||| |||||||| 
Sbjct  61   GTTCTATGGCTCTCTCTCTTATTCCTCCTCCTCCACCACTTCTACTCCCTTAACTTCCGC  120

Query  338  CGTCTCTACTCTCTAAACGCGGTGGAGCCATCATTGTTGAAGCAACACTACCGTAGCT--  395
            ||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||  
Sbjct  121  CGTCTCTACTCTCTAAACGCGGTGGAGCCATCAGTGTCGAAGCAACACCACCGTAGCTAC  180

Query  396  ---A-TAGATTAGTGAGCAGAAAAGTTCTCTCCGACAGATTCGACTTCACACCTTTCCAT  451
               | ||||||||| |||||||||  ||||||| ||| |||||||||||| |||||||||
Sbjct  181  ACCATTAGATTAGTAAGCAGAAAAACTCTCTCCCACAAATTCGACTTCACGCCTTTCCAT  240

Query  452  AGCCGAGATAACAGCCGACAT-A--ACCATCGTTCCGGCGAGCAATACGACGGTGATGAG  508
            ||||||||||||||||| ||| |  ||| || |||||| |||||||||||||||||||||
Sbjct  241  AGCCGAGATAACAGCCGCCATGATCACCGTCATTCCGGTGAGCAATACGACGGTGATGAG  300

Query  509  ATAGACCCTCGTTACGGAGTGGAGAAACGCCGTGTTCCCTCCGGACCCAATCCGTTGCAC  568
            || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  301  ATCGACCCTCGTTACGGAGTGGAGAAACGCCGTGTTCCCTCCGGACCTAATCCGTTGCAC  360

Query  569  CATTGA  574
            ||||||
Sbjct  361  CATTGA  366



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29469014841


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5