BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68800.1
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315900 jgi|Araly1|315900|fgenesh1_pm.C_scaffold_2000933 1513 0.0
> Ahg315900 jgi|Araly1|315900|fgenesh1_pm.C_scaffold_2000933
Length=1059
Score = 1513 bits (819), Expect = 0.0
Identities = 994/1076 (92%), Gaps = 22/1076 (2%)
Strand=Plus/Plus
Query 70 ATGTTTCCTTCTCTAGATACCAATGGCTATGACCTCTTTGATCCCTTC-ATTCCCCATCA 128
||||||||||||||||| |||||||||||||||||||||||||||||| || ||||| ||
Sbjct 1 ATGTTTCCTTCTCTAGACACCAATGGCTATGACCTCTTTGATCCCTTCAATCCCCCA-CA 59
Query 129 AACAACCATGTTTCCTTCTTTCATTACTCACATTCAAAGCCCTAATTCTCACCATCACTA 188
|||||||||| |||||||||||| | | ||||||||||||||| |||||||||||||||
Sbjct 60 AACAACCATGCTTCCTTCTTTCACCAGTTACATTCAAAGCCCTAGTTCTCACCATCACTA 119
Query 189 CTCTTCGCCTTCTTTTCCTTTCTCTTCC-GATTTTCTTGAGAGTTTTGATGAATCCTTCT 247
||||||||| |||||||||||||| ||| ||||||||||| |||||| |||||||||| |
Sbjct 120 CTCTTCGCCATCTTTTCCTTTCTC-TCCAGATTTTCTTGACAGTTTTAATGAATCCTTGT 178
Query 248 TGATAAACCAATTCTTGTTACAGCAGCAAGATGTAGCAGCAAATGTTGTTGAATCTCCTT 307
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 179 TGATAAACCAATTCTTGTTACAGCAACAAGATGCAGCAGCAAATGTTGTTGAATCTCCAA 238
Query 308 GGAAATTTTGCAAGAAGCTTGAGCTTAAGAAGAAGAATGAGAAGTGTGTTGATGGAAGCA 367
| ||| |||||||||||||| |||| ||||| || |||||||||||||||||||||| ||
Sbjct 239 GAAAACTTTGCAAGAAGCTTCAGCTAAAGAATAATAATGAGAAGTGTGTTGATGGAACCA 298
Query 368 CCTCACAAGAGGTTCAATGGAGAAGGACGGTCaaaaaaaGGGACAGGCATAGTAAGATCT 427
||||| || | |||| | ||||||| |||| ||| ||||||||||| |||||||||||||
Sbjct 299 CCTCAGAACAAGTTCCACGGAGAAGAACGGCCAAGAAAAGGGACAGACATAGTAAGATCT 358
Query 428 GCACGGCTCAAGGTCCTAGAGACCGGAGGATGAGGCTGTCTCTTCAGATTGCTCGCAAGT 487
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GCACTGCTCAAGGTCCTAGAGACCGGAGGATGAGGCTGTCTCTTCAGATTGCTCGCAAGT 418
Query 488 TTTTCGATCTTCAAGACATGTTGGGTTTCGACAAGGCGAGCAAGACGATTGAATGGCTTT 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TTTTCGATCTTCAAGACATGTTGGGTTTCGACAAGGCGAGCAAGACGATTGAATGGCTTT 478
Query 548 TCTCCAAATCAAAGACTTCCATCAAACAACTTAAAGAAAGAGTGGCTGCATCGGAAGGAG 607
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TCTCCAAATCAAAGGGTTCCATCAAACAACTTAAAGAAAGAGTGGCTGCATCGGAAGGAG 538
Query 608 GAGGAAAGGATGAACATCTCCAGGTTGATGAAAAGGAAAAGGATGAGACACTGAAGTTGA 667
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 539 GAGGACAGGATGAACATCTCCAGGTTGATGAAAAGGAAAAGGATGAGACATTGAAGGTGA 598
Query 668 GAGTCTCAaagagaagaacaaagactatggagagctcttttaagactaaagagtcgagag 727
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 599 AAGTCTCAAAGAGAAGAACAAAGACTATGGAGAGCTCTTGTAAGACTAAAGAGTCGAGAG 658
Query 728 agagagctagaaagcgagcaagagagagaacaatggcaaagatgaagatgagaTTATTTG 787
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGAGAGCTAGAAAACGAGCAAGAGAGAGAACAATGGCAAAGATGAAGATGAGATTATTTG 718
Query 788 AGACCTCGGAAACAATTTCAGATCCTCATCAAGAAACTAGAGA---GATCAAGATAACCA 844
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 719 AGACCTCGGAAACAATTTCAGATCCTCATCAAGAAACTAGAGATCAGATCAAGATAACCA 778
Query 845 ATGGTGTACAATTACTAGAAAAGGAAAATAAAGAACAAGAATGGAGTAATACTAATGATG 904
|||||| |||||||||||||| |||| |||||||||||||||||||| ||||||||| ||
Sbjct 779 ATGGTGAACAATTACTAGAAAGGGAACATAAAGAACAAGAATGGAGTCATACTAATG-TG 837
Query 905 TTCACATGGTAGAGTATCAAATGGATTCTGTGAGCATCATAGAGAAGTTTCTTGGACTAA 964
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 A--ACATGGTTGAGTATCAAATGGATTCTGTGAGCATCATAGAGAAGTTTCTTGGACTAA 895
Query 965 CCAGTGACTCTAGCTCCTCTTCCATTTTTGGTGACTCCGAGGAATGTTACACAAGTCTTA 1024
|||| ||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 896 CCAGCGACTCTAGCACCTCTTCCATCTTTGGTGACTCCGAGGAATGTCACACAAGTCTTA 955
Query 1025 GTTCAGTAAGAGGAATGTCGACACCAAGGGAACACAACACAACTTCAATAGCAACGGTGG 1084
| ||| ||| ||||||| ||||||||||||||||||||||||| ||| | ||
Sbjct 956 GCTCAATAATAGGAATGACGACACCAAGGGAACACAACACAACGG---TAG-A----TG- 1006
Query 1085 ATGAGGAGAAAAGCCCCATATCATCTTTCTCTCTATATGATTATCTCTGCTACTGA 1140
| || |||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 1007 A--AG-AGAAAAGCCCTATTTCATCTTTTTCTCTATATGATTATCTCTGCTACTGA 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51656552535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5