BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68810.1
Length=1511
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476008 jgi|Araly1|476008|fgenesh2_kg.2__1138__AT1G68810.1 2292 0.0
> Ahg476008 jgi|Araly1|476008|fgenesh2_kg.2__1138__AT1G68810.1
Length=1473
Score = 2292 bits (1241), Expect = 0.0
Identities = 1422/1503 (95%), Gaps = 37/1503 (2%)
Strand=Plus/Plus
Query 1 AAActtttgtctctttttaactctcttaactttcgtttcttctcctaccttcttttacca 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 AAACTTTTGTCTCTTTTTAACTCTCTTAACTTTTGTTTCTTCTCCTACCTTCTTTTACCA 60
Query 61 acctttcctttctcttaCACACatatatatatacatatatagagagagagaagagGACAA 120
||||||||||||| ||||||||||||||||||| | | | |||||||||||| ||| ||
Sbjct 61 ACCTTTCCTTTCTTTTACACACATATATATATATAGAGAGAGAGAGAGAGAATTGGAAAA 120
Query 121 AGAGTTGAAAGATGAAGACTCTCATGTCTTCATAGAAACAAGTGATATGTGCGCTaagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGAGTTGAAAGATGAAGACTCTCATGTCTTCATAGAAACAAGTGATATGTGCGC------ 174
Query 181 agaagaagaagaagaagaagaagaagaCAGTTCTGAAGCCATGAACAACATACAAAATTA 240
| ||| | ||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 175 ---A-AAG-A-AAGAAGAAGCAGAAGACAGTTCTGGAGCCATGAACAACATACAAAATTA 228
Query 241 CCAAAATGACCTCTTCTTTCACCAACtcatctctcatcatcaccatcatcatcatGATCC 300
||||||||||||||||||||||| | | |||||| | | |||||||||||||||
Sbjct 229 CCAAAATGACCTCTTCTTTCACC-A---A---CTCATC-T---C-TCATCATCATGATCC 276
Query 301 TTCTCAATCTGAAA-CTTTGGGAGCATCCGGTAACGTTGGATCTGGTTTCACTATCTTCT 359
||||||| |||||| |||| ||||||||||||||||| ||||| || |||||||||||||
Sbjct 277 TTCTCAAACTGAAACCTTT-GGAGCATCCGGTAACGTCGGATCCGGATTCACTATCTTCT 335
Query 360 CTCAAGATTCCGTCTCTCCAATATGGTCTCTACCTCCACCTACCTCGATCCAACCACCAT 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 336 CTCAAGATTCCGTCTCTCCAATATGGTCTCTACCTCCACCTACCTCGATCCAACCACCGT 395
Query 420 TTGATCAGTTTCCTCCTCCTTCTTCTTCTCCAGCATCTTTCTACGGAAGTTTCTTCAACA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 TTGATCAGTTTCCTCCTCCTTCTTCTTCTCCAGCATCTTTCTACGGAAGTTTCTTCAACA 455
Query 480 GAAGTCGAGCTCATCATCAGGGATTACAGTTTGGGTACGAGGGTTTTGGTGGAGCCACGT 539
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 456 GAAGTCGAGCTCATCATCAGGGATTACAGTTCGGGTACGAGGGTTTTGGTGGAGCCACGT 515
Query 540 CAGCAGCACATCATCATCATGAACAACTTCGGATCTTGTCGGAAGCTTTAGGTCCGGTAG 599
||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 516 CAGCAGCACATCATCATCATGAACAGCTTCGGATCTTGTCTGAAGCTTTAGGTCCTGTAG 575
Query 600 TACAAGCCGGGTCCGGTCCTTTTGGGTTACAAGCTGAGTTAGGGAAGATGACAGCACAAG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 576 TACAAGCCGGGTCCGGTCCTTTTGGGTTACAAGCTGAGTTAGGGAAGATGACAGCCCAAG 635
Query 660 AGATCATGGACGCTAAAGCTTTGGCTGCTTCAAAGAGTCATAGTGAAGCTgagagaagaa 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 AGATCATGGACGCTAAAGCTTTGGCTGCTTCAAAGAGTCATAGTGAAGCTGAGAGAAGAA 695
Query 720 gaagagagagaaTCAATAATCATCTCGCTAAGCTCCGTAGCATATTACCCAACACCACCA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 GAAGAGAGAGAATCAATAATCATCTCGCTAAGCTCCGTAGCATATTACCCAACACCACCA 755
Query 780 AAACGGATAAAGCGTCGTTACTAGCTGAAGTGATCCAACATGTGAAAGAGTTGAAGAGAG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 AAACGGATAAAGCGTCGTTACTAGCTGAAGTGATCCAACATGTGAAAGAGTTGAAGAGAG 815
Query 840 AGACTTCAGTGATCTCAGAGACAAATCTTGTCCCAACGGAAAGCGATGAGTTAACGGTAG 899
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 816 AGACTTCAGTGATCTCAGAGACAAATCTTATCCCAACGGAGAGCGATGAGTTAACGGTAG 875
Query 900 CTTTCACGGAGGAGGAAGAAACCGGAGATGGCAGATTTGTAATTAAAGCGTCGCTTTGCT 959
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 CTTTTACGGAGGAGGAAGAAACCGGAGATGGCAGATTTGTAATTAAAGCGTCGCTTTGCT 935
Query 960 GTGAAGACAGGTCGGATCTCTTGCCTGACATGATTAAAACATTGAAAGCTATGCGTCTCA 1019
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 936 GTGAAGACAGGTCGGATCTCTTGCCTGACATGATTAAAACATTGAAAGCAATGCGTCTCA 995
Query 1020 AAACGCTCAAGGCGGAGATAACCACCGTTGGGGGACGAGTCAAGAACGTTTTGTTTGTTA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 996 AAACGCTCAAGGCGGAGATAACCACCGTTGGGGGACGAGTCAAGAACGTTTTGTTCGTCA 1055
Query 1080 CCGGAGAAGAGAGCTCCGGTGAGGAAGTGGAGGAAGAGTACTGTATAGGGACGATTGAGG 1139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1056 CCGGGGAAGAGAGCTCCGGTGAGGAAGTGGAGGAAGAGTACTGTATAGGGACGATAGAGG 1115
Query 1140 AAGCTTTGAAAGCGGTGATGGAGAAGAGCAATGTAGAGGAATCATCTTCTTCTGGAAATG 1199
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 1116 AAGCTTTGAAAGCGGTGATGGAGAAGAGCAATGTGGAGGAATTATCTTCTTCTGGAAATG 1175
Query 1200 CTAAGAGACAGAGAATGAGTAGTCACAACACTATCACTATCGTCGAACAACAACAACAAT 1259
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1176 CTAAGAGACAGAGAATGAGTAGTCACAATACTATCACTATCGTTGAACAACAACAACAAC 1235
Query 1260 ATAATCAGAGGTAATCAATTTTTTACTTAAATCGCtttttt-tttCTTACTTTCGGTGTA 1318
|| |||||||||||||||||||| |||||| ||||||| | ||| ||| ||||||||||
Sbjct 1236 ATCATCAGAGGTAATCAATTTTT-ACTTAA-TCGCTTTCCTCTTT-TTATTTTCGGTGTA 1292
Query 1319 TCTACTACGTGTGT-T-GTTTGCTGGTTATGGAAATGAATGTTGTACGTCACGTTATACT 1376
|||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1293 TCTACTACGTGTGTGTTGTTTGATGGTTATGGAAATGAATGTTGTACGTCACGTTATACT 1352
Query 1377 ATAGATATATGTGTGTTTGTGTGTATGTATAACGGA-AGTATTTGTATCCGTTGTGGTCT 1435
| |||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||
Sbjct 1353 AAAGATATATGTGTGTTTGTGTGTATGTATAACGGAGA-TATTTGTATCCGTTGGGGTCT 1411
Query 1436 TGGACTTTTGGTTTGGTTCTAAGATACTTATTTTTAAAAA--CTTGTATCGTTGAGTTGG 1493
||||||||||||||| ||||||||||||| |||| ||||| ||||||||||| ||||||
Sbjct 1412 TGGACTTTTGGTTTGCTTCTAAGATACTT-TTTTAAAAAAATCTTGTATCGTTTAGTTGG 1470
Query 1494 TTT 1496
|||
Sbjct 1471 TTT 1473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56564013825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5