BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68820.1
Length=1784
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476009 jgi|Araly1|476009|fgenesh2_kg.2__1139__AT1G68820.1 2771 0.0
> Ahg476009 jgi|Araly1|476009|fgenesh2_kg.2__1139__AT1G68820.1
Length=1756
Score = 2771 bits (1500), Expect = 0.0
Identities = 1691/1780 (95%), Gaps = 26/1780 (1%)
Strand=Plus/Plus
Query 4 TTTCTCCGAGTCGGGAAAATGTCTTTTTCTCGAAAGAATAAATCTTTTTCTCTTCTCTCT 63
|||||||||||| |||||||||||||||||| |||||||||||||||||||| | ||||
Sbjct 1 TTTCTCCGAGTCTGGAAAATGTCTTTTTCTCTAAAGAATAAATCTTTTTCTC-T-TCTC- 57
Query 64 GTGTTACCCTCTTGAAATTTTCCGCGAAAAATCTCAACTTTTCCATCTGAAAACCCCCCA 123
| |||||||| |||||||||||||||||||||||||| ||||||| |||||
Sbjct 58 ----T----TCTTGAAAATTTCCGCGAAAAATCTCAACTTTTCCCTCTGAAATTTCCCCA 109
Query 124 AAATCAAACAATTGGATCTTGATTTTTAGCTGTGATTT-AGTGATTAAGAGGCTTAGGGT 182
||||||||||||||||||||||||| ||||||| ||| ||||||| |||||||||||||
Sbjct 110 GAATCAAACAATTGGATCTTGATTTTGAGCTGTG-TTTGAGTGATTTAGAGGCTTAGGGT 168
Query 183 TTGTGGCGAAATGTTGGTACAGAGAAGAGTAATGAGTTGGAGAAGAGTCTGGAAGTCGTT 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 TTGTGGCGAAATGTTGGTACAGAGAAGAGTAATGAGTTGGAGAAGAGTCTGGAAGTCGTT 228
Query 243 TCAAGCGGCTTCTGCGCATTGTTTACTCTTCTCCTTCACGCTTCTTCTCGCTTTGAAGCT 302
||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 229 TCAAGCGGCCTCTGCGCACTGTTTACTCTTCTCCTTCACGCTTCTTCTTGCTTTGAAGCT 288
Query 303 TGATCATGTTGTTTCTCATTCATGGTGGTTTGTATTTGCACCCTTGTGGTTGTTTCATGC 362
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 289 TGATCATGTTGTTTCTCATTCATGGTGGTTTATATTTACACCCTTGTGGTTGTTTCATGC 348
Query 363 TGTGATTGCTCGTGGTAGATTTTCATTGCCTGCTCCATCAATGCCTCATGATCGACATTG 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 TGTGATTGCTCGTGGTAGATTTTCATTGCCTGCTCCATCAATGCCTCATGATCGACATTG 408
Query 423 GGCTCCTTTTCACTCGGTTATGGCAACACCACTTCTTGTTGCTTTTGAGATCCTTCTCTG 482
|||||||||||| ||||| ||||||||||| || |||||||| |||||||||||||||||
Sbjct 409 GGCTCCTTTTCATTCGGTGATGGCAACACCGCTGCTTGTTGCCTTTGAGATCCTTCTCTG 468
Query 483 TGTACATCTTGAAGATAAATATGTTGTTGACTTAAAGATTGTCTTTCTACCGTTGCTTGC 542
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 469 TGTACATCTTGAAGATAAATATGTTGTTGACTTAAAGATTGTCTTCCTACCGTTGCTTGC 528
Query 543 ATTTGAGGTAGCAATTTTGATAGATAATGTCAGAATGTGCAGGACGCTCATGCCTGGAGA 602
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 529 ATTTGAGGTAGCAATTTTGATAGATAATGTCAGAATGTGCAGGACACTCATGCCTGGAGA 588
Query 603 TGAAGAAACTATGAGTGATGAAGCCATATGGGAAACACTTCCTCATTTCTGGGTTTCCAT 662
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 TGAGGAAACTATGAGTGATGAAGCCATATGGGAAACACTTCCTCATTTCTGGGTTTCCAT 648
Query 663 ATCTATGGTTTTCTTCATTGCCGCAACAACCTTCACTCTTCTTAAATTATGTGGTGACGT 722
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 649 ATCTATGGTATTCTTCATTGCCGCGACAACCTTCACTCTTCTTAAATTATGTGGTGACGT 708
Query 723 AGCTGCGTTGGGATGGTGGGACTTATTTATAAACTTCGGAATAGCAGAGTGCTTTGCGTT 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 AGCTGCGTTGGGATGGTGGGACTTATTTATAAACTTCGGAATAGCAGAGTGCTTTGCGTT 768
Query 783 TCTTGTCTGTACAAAGTGGAGCAATCAGTCAATTCATAGGTATTCACATATACCGGAACC 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 TCTTGTCTGTACAAAGTGGAGCAATCAGTCAATTCATAGGTATTCACATATACCGGAACC 828
Query 843 TAGCTCATCTTCAATGGTAGTAAGATATCTGGATTGGAACAGAGGTCTAGTAGTAACCGC 902
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 TAGCTCATCTTCAATGATAGTAAGATATCTGGATTGGAACAGAGGTCTAGTAGTAACCGC 888
Query 903 TGACGACGAGCATCAGCAAAGCAACAGAATATGTGGTCTCCAAGATATTGGTGGACATGT 962
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 889 TGACGACGAGCATCAGCAAAGCAACAGAATATGCGGTCTCCAAGATATTGGTGGACATGT 948
Query 963 TATGAAAATTCCATTTGTGACCTTTCAAATCATCCTTTTCATGCGCTTAGAGGGAACGCC 1022
||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 949 TATGAAAATTCCATTCGTTACCTTTCAAATTATCCTTTTCATGCGCTTAGAGGGAACGCC 1008
Query 1023 AGCTTCTGCCAAAAACATTCCGATTTTAGTTCTGTTTGTACCTCTTTTTCTGTTACAAGG 1082
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1009 CGCTTCTGCCAAAAACATTCCGATTTTAGTTCTGTTTGTACCTCTTTTTCTGCTACAAGG 1068
Query 1083 AGCTGGGGTACTTTTTGCTATGTATAGATTGGTTGAGAAATCAGTCTTATTAATAAATAG 1142
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1069 AGCTGGGGTACTTTTTGCTACATATAGATTGGTTGAGAAATCAGTCTTATTGATAAATAG 1128
Query 1143 TGGTAGTGGTTCTTATGGAAGATATTTTACCGCAACATCATCAGCTCGTGAATTCCTGGG 1202
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1129 TGGTAGTGGTTCTTATGGAAGATATTTTACCGCAACATCATCAGCTCGTGAGTACCTGGG 1188
Query 1203 ATTCTTTCAACATGGTGCAAGATTACTTGGCTGGTGGTCTATCGATGAAGGAAGTCGGGA 1262
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1189 ATTCTTTCAACATGGTGCAAGATTACTTGGCTGGTGGTCTATCGATGAAGGTAGTCGGGA 1248
Query 1263 AGAACAAGCAAGGCTCTACTCTGGAGAAGCTACTGGATACAACACCTTCTCACCAGAGGT 1322
||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1249 AGAACAAGCTAGGCTCTACTCAGGAGAAGCTACTGGGTACAACACCTTCTCACCAGAGGT 1308
Query 1323 TGTGAAGAAAATGCCAAAGTCTGATCTTGTTGAAGAGATATGGAGACTTCAAGCTGCATT 1382
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1309 TGTGAAGAAAATGCCAAAGTCTGATCTTGTTGAAGAGATATGGAGACTCCAAGCTGCATT 1368
Query 1383 GAGTGAGCAAACAGATATCACCAGTTATAGCCAGCAAGAGTACGAAAGGCTTCAAAACGA 1442
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1369 GAGTGAGCAAACAGATATCACCAATTATAGCCAGCAAGAGTACGAAAGACTTCAAAACGA 1428
Query 1443 GAAGATTCTTTGTAGAGTTTGCTTTGAAGATCCGATCAACGTGGTTCTACTCCCATGTAG 1502
|||||||||||| |||||||||||||||||||| ||||| |||||| ||||||||||||
Sbjct 1429 GAAGATTCTTTGCAGAGTTTGCTTTGAAGATCCCATCAATGTGGTTTTACTCCCATGTAA 1488
Query 1503 ACATCACGTCCTCTGCAGTACATGCTGCGAGAAATGCAAGAAATGTCCGATTTGTCGTGT 1562
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1489 ACATCATGTCCTCTGCAGTACGTGCTGCGAGAAATGCAAGAAATGTCCGATTTGTCGTGT 1548
Query 1563 CCTGATCGAGGAGCGTATGCCTGTATACGATGTGTAGATTTC-AGAGCTCCAATCCAGAA 1621
|||||||||||||||||||||||||||||||||||||||||| ||||| | |||||| ||
Sbjct 1549 CCTGATCGAGGAGCGTATGCCTGTATACGATGTGTAGATTTCCAGAGCACTAATCCATAA 1608
Query 1622 ATGAAGAATACATTTCTTGCTTGTTTGGTTTTGTTTTAGTAATGAAGCAAGCACtatata 1681
|||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1609 ATGAAGAACATATTTCTTGCTTGTTTGGTTTTGTTTTAGTAATGAAGCAAGCACT-TATA 1667
Query 1682 tatatatGTTACAACTTGCATAGGAAAAATTCTGATTCGTTTTCGAGTGGATGTAAATAA 1741
|||||||||||||||||||||||||||| | | || || | | ||||| ||||
Sbjct 1668 TATATATGTTACAACTTGCATAGGAAAA-TCCAAAT--GT----G-G---ATGTACATAA 1716
Query 1742 TACTGTAAACCATCGTATATGTCATGAATCTTCTTTCTCT 1781
|| ||||| ||||||||||||||||||||||||| |||||
Sbjct 1717 TATTGTAATCCATCGTATATGTCATGAATCTTCTCTCTCT 1756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66962650710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5