BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68840.1
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476011 jgi|Araly1|476011|fgenesh2_kg.2__1141__AT1G68840.1 1868 0.0
> Ahg476011 jgi|Araly1|476011|fgenesh2_kg.2__1141__AT1G68840.1
Length=1357
Score = 1868 bits (1011), Expect = 0.0
Identities = 1129/1185 (95%), Gaps = 11/1185 (1%)
Strand=Plus/Plus
Query 1 GTAACAACGTCACCTAAATCTCTCTCACCCAATTTGTGTTTCTTCTTTCTGCTAAAAGGT 60
|||||||||||||| |||||||||||||| |||||||||| |||||||||| ||||||||
Sbjct 1 GTAACAACGTCACCAAAATCTCTCTCACCTAATTTGTGTTACTTCTTTCTGTTAAAAGGT 60
Query 61 TATAATTTTTGTTTCTTGGTTTGGTGAGAATCTTCAAGAAACTGAAACAAAGAAAATGGA 120
|||||||| ||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 61 TATAATTTGTGTTTCTTGGTTTGGTGAGAATCTTCAAGAAACAGAAAC-AA-AAAATGGA 118
Query 121 TTCTAGTTGCATAGACGAGATAAGTTCCTCCACTTCAGAATCTTTCTCCGCCACCACCGC 180
||| |||||||||||||||||||||||||||||||||||||||||||| |||||| || |
Sbjct 119 TTCCAGTTGCATAGACGAGATAAGTTCCTCCACTTCAGAATCTTTCTCAGCCACCGCCAC 178
Query 181 CAAGAAGCTC-T-CTCCTCCTCCCGCGGCGGCGTTACGCCTCTACCGGATGGGAAGCGGC 238
| | ||| | || ||| ||| || ||||||||||||||||||||||||||||| |||
Sbjct 179 CTTG--TCTCTTCCTTCTCATCCGGCTGCGGCGTTACGCCTCTACCGGATGGGAAGTGGC 236
Query 239 GGGAGCAGCGTCGTGTTGGATCCCGAGAACGGCCTAGAGACGGAGTCACGAAAGCTACCA 298
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GGAAGTAGCGTCGTGTTGGATCCCGAGAACGGCCTAGAGACGGAGTCACGAAAGCTACCA 296
Query 299 TCTTCAAAATACAAAGGTGTTGTTCCTCAGCCTAACGGAAGATGGGGAGCTCAGATCTAC 358
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCGTCAAAATACAAAGGTGTGGTTCCTCAGCCTAACGGAAGATGGGGAGCTCAGATCTAC 356
Query 359 GAGAAGCACCAACGAGTATGGCTCGGGACTTTCAACGAGCAAGAAGAAGCTGCTCGTTCC 418
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GAGAAACACCAACGAGTATGGCTCGGGACTTTCAACGAGCAAGAAGAAGCTGCTCGTTCC 416
Query 419 TACGACATCGCAGCTTGTAGATTCCGTGGCCGCGACGCCGTCGTCAACTTCAAGAACGTT 478
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TACGACATCGCCGCTCGTAGATTCCGTGGCCGCGACGCCGTCGTCAACTTCAAGAACGTT 476
Query 479 CTGGAAGACGGCGATTTAGCTTTTCTTGAAGCTCACTCAAAGGCCGAGATCGTCGACATG 538
||||||||||| |||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 477 CTGGAAGACGGTGATTTAGCTTTTCTTGAAGCTCACTCTAAGGCCGAGATCGTGGATATG 536
Query 539 TTGAGAAAACACACTTACGCCGACGAGCTTGAACAGAACAATAAACGGCAGTTGTTTCTC 598
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 537 TTGAGAAAACACACTTACGCCGACGAGCTTGAACAAAACAATAAACGGCGGTTGTTTCTC 596
Query 599 TCCGTCGACGCTAACGGAAAACGTAACGGATCGAGTACTACTCAAAACGACAAA-GTTTT 657
|||||||||| ||||||||||||||||||||||||||| ||||||||||| ||| |||||
Sbjct 597 TCCGTCGACGTTAACGGAAAACGTAACGGATCGAGTACAACTCAAAACGA-AAACGTTTT 655
Query 658 AAAGACGCGTGAAGTTCTTTTCGAGAAGGCTGTTACACCTAGCGACGTTGGGAAGCTAAA 717
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 656 AAAGACGCGTGAAGTTCTTTTCGAGAAGGCTGTTACACCTAGCGACGTCGGGAAGCTAAA 715
Query 718 CCGTCTCGTGATACCTAAACAACACGCCGAGAAACACTTTCCGTTACCGTCACCGTCACC 777
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 716 CCGTCTCGTGATACCTAAACAACACGCGGAGAAACACTTTCCGTTACCGTCACCGTCACC 775
Query 778 GGCAGTGACTAAAGGAGTTTTGATCAACTTCGAAGACGTTAACGGTAAAGTGTGGAGGTT 837
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 776 GGCAGTGACTAAAGGCGTTTTGATCAACTTCGAAGACGTTAACGGCAAAGTGTGGAGGTT 835
Query 838 CCGTTACTCATACTGGAACAGTAGTCAAAGTTACGTGTTGACCAAGGGATGGAGTCGATT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 CCGTTACTCATACTGGAACAGTAGTCAAAGTTACGTGTTGACCAAGGGATGGAGTCGATT 895
Query 898 CGTCAAGGAGAAGAATCTTCGAGCCGGTGATGTTGTTACTTTCGAGAGATCGACCGGACT 957
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 896 CGTCAAGGAGAAGAATCTCCGAGCCGGTGATGTTGTTACTTTCGAGAGATCGACCGGACT 955
Query 958 AGAGCGGCAG-TTATATATTGATTGGAAAGTTCGGTCTGGTCCGAGAGAAAACCCGGTTC 1016
||| |||||| || ||||||||||||||||| || || |||||||| |||||||||||||
Sbjct 956 AGACCGGCAGCTT-TATATTGATTGGAAAGTCCGATCCGGTCCGAGGGAAAACCCGGTTC 1014
Query 1017 AGGTGGTGGTTCGGCTTTTCGGAGTTGATATCTTTAATGTGACCACCGTGAAGCCAAACG 1076
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1015 AGGTGGTGGTTCGGCTTTTCGGAGTTGATATCTTTAATGTGACTACCGTGAAGCCAAACG 1074
Query 1077 ACGTCGTGGCCGTTTGCGGTGGAAAGAGATCTCGAGATGTTGATGATATGTTTGCGTTAC 1136
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 ACGTCGTAGCCGTTTGCGGTGGAAAGAGATCTCGAGATGTTGATGATATGTTTGCGTTAC 1134
Query 1137 GGTGTTCCAAGAAGCAGGCGATAATCAATGCTTTGTGACATAttt 1181
||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1135 GGTGTTCCAAGAAGCAGGCGATAATCAATGCTTTGTGACAT-TTT 1178
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52716899080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5