BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68850.1
Length=1271
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476012 jgi|Araly1|476012|fgenesh2_kg.2__1142__AT1G68850.1 1698 0.0
Ahg485262 jgi|Araly1|485262|fgenesh2_kg.5__1254__AT3G49110.1 54.7 2e-06
Ahg485264 jgi|Araly1|485264|fgenesh2_kg.5__1256__AT3G49120.1 52.8 6e-06
> Ahg476012 jgi|Araly1|476012|fgenesh2_kg.2__1142__AT1G68850.1
Length=1189
Score = 1698 bits (919), Expect = 0.0
Identities = 1066/1136 (94%), Gaps = 14/1136 (1%)
Strand=Plus/Plus
Query 20 ATATTTTCCCAAAATTTGGATCAAAAAGTTTTCCGATAGAAGAAATTAAATATGATGAGA 79
|||||||||||||||||||||||||||| ||||||||||||| || | ||||||
Sbjct 1 ATATTTTCCCAAAATTTGGATCAAAAAGGTTTCCGATAGAAG------AA-CT-ATGAGA 52
Query 80 CTCCTCTTTGTATTCTTCATGGTTCACACCATCTTTATCCCATGCTTTTCCTTTGATACA 139
|||||| |||| ||||| ||||||| | ||||||||||||| |||||||||||||||| |
Sbjct 53 CTCCTCCTTGTGTTCTTTATGGTTCTCGCCATCTTTATCCCCTGCTTTTCCTTTGATATA 112
Query 140 CCGGGGAAGGATCTTCCTTTAACCCTAGATTATTACAAGTCTACTTGTCCAACCGTATTT 199
||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 113 CCGGGAAAGGATCTTCCTTTAATCCTAGATTATTACAAGTCTACTTGCCCAACCGTATTT 172
Query 200 GACGTCATCAAGAAAGAAATGGAATGCATAGTGAAGGAAGATCCTAGAAATGCAGCCATA 259
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 173 GACGTCATCAAGAAAGAAATGGAATGCATTGTGAAGGAAGATCCTCGAAATGCAGCCATA 232
Query 260 ATTATTCGTCTT-CACTTCCACGACTGCTTTGTCCAAGGATGTGATGGATCGGTGTTGCT 318
||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 233 ATTATTCGT-TTACACTTCCACGATTGCTTTGTCCAAGGATGCGATGGATCGGTGTTGCT 291
Query 319 AGACGAGACAGAAACTCTACAGGGAGAGAAGAAAGCTTCTCCCAACATAAATTCATTGAA 378
|||||| ||||| | |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 292 AGACGAAACAGAGTCACTACAGGGAGAGAAAAAAGCTTCTCCCAACATAAACTCATTGAA 351
Query 379 AGGATACAAAATTGTCGACAGAATCAAGAACATAATCGAATCCGAATGTCCTGGAGTTGT 438
||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 352 AGGATACAAAATTATAGACAGAATCAAGAACATAATCGAATCCGAATGCCCTGGAGTTGT 411
Query 439 TTCATGCGCTGATCTTCTCACAATTGGTGCTAGAGATGCTACAATCCTGGTGGGTGGGCC 498
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 TTCATGCGCTGATCTCCTCACAATTGGTGCTAGAGATGCTACAATCCTGGTGGGTGGGCC 471
Query 499 TTACTGGGATGTTCCTGTGGGAAGAAAAGATTCAAAAACCGCAAGCTACGAGCTTGCCAC 558
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 472 TTACTGGGATGTTCCTGTGGGAAGAAAAGATTCAAAAACAGCAAGTTACGAGCTTGCCAC 531
Query 559 AACAAACCTTCCAACTCCAGAAGAGGGTTTAATCAGCATCATTGCTAAGTTCTATTCTCA 618
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 532 AACAAACCTTCCAACTCCAGAAGAGGGTTTGATCAGCATCATTGCTAAGTTCTACTCTCA 591
Query 619 AGGTCTCTCGGTTGAAGACATGGTCGCTCTTATAGGAGCGCACACGATCGGAAAAGCACA 678
||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 592 AGGTCTCTCTGTTGAAGACATGGTCGCTCTTATAGGAGCGCACACGATTGGAAAGGCACA 651
Query 679 ATGTCGCAACTTCCGATCCCGAATTTATGGAGATTTTCAAGTGACGTCAGCCCTAAATCC 738
|||||| |||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 652 ATGTCGGAACTTCCGATCCCGGATCTATGGAGATTTTCAGGTGACGTCAGCCCTAAATCC 711
Query 739 AGTTTCGGAGACGTACTTGGCAAGTCTTCGAGAGATTTGTCCGGCGAGTAGCGGAGAAGG 798
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 712 AGTTTCGGAGACGTACTTGGCAAGTCTTCGAGAGATTTGTCCTGCAAGCAGCGGAGAAGG 771
Query 799 TGATAGTAACGTGACGGCGATAGACAATGTGACGCCGAATCTCTTCGATAACTCGATCTA 858
|||||| || ||||| || || |||||||||||||| |||||||| ||||||||||||||
Sbjct 772 TGATAGCAATGTGACAGCAATGGACAATGTGACGCCAAATCTCTTTGATAACTCGATCTA 831
Query 859 CCACACACTGCTAAGAGGAGAAGGGTTACTGAATTCGGACCAGGAGATGTACACGAGCTT 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 CCACACACTGCTAAGAGGAGAAGGGTTACTGAATTCGGACCAGGAGATGTACACGAGCTT 891
Query 919 GTTCGGGATACAAACGCGGCGAATCGTGAGCAAGTATGCGGAGGATCCAGTGGCTTTCTT 978
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 892 GTTCGGGATACAAACGCGGCGGATCGTGAGCAAGTATGCGGAGGATCCAGTGGCTTTCTT 951
Query 979 CGAGCAATTCTCGAAGTCGATGGTAAAGATGGGGAACATTTTGAACTCTGAAAGCTTGGC 1038
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 952 TGAGCAATTCTCGAAGTCGATGGTGAAGATGGGGAACATTTTGAACTCTGAAAGCTTTGC 1011
Query 1039 TGATGGAGAAGTTAGAAGAAATTGCAGATTTGTGAATACATGATTCATCAACAACGAAAC 1098
||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||
Sbjct 1012 TGATGGAGAAGTTAGAAGAAATTGCCGATTTGTCAATACATGAAACATCAACAACGAAAC 1071
Query 1099 TAAAA-AATGGAGAAAATAATCTATTTCTGATCTTTATTTATATAAGAAAGAAAAA 1153
|||| |||||||||| ||| ||||||||||||||||||||||||||||| |||||
Sbjct 1072 -AAAACAATGGAGAAA-TAAACTATTTCTGATCTTTATTTATATAAGAAA-AAAAA 1124
> Ahg485262 jgi|Araly1|485262|fgenesh2_kg.5__1254__AT3G49110.1
Length=1242
Score = 54.7 bits (29), Expect = 2e-06
Identities = 50/60 (83%), Gaps = 2/60 (3%)
Strand=Plus/Plus
Query 264 TTCGTCTTCACTTCCACGACTGCTTTGTCCAA-GGATGTGATGGATCGGTGTTGCTAGAC 322
|||||||||||||||||||||||||||| || || ||||| | ||| | ||| |||||
Sbjct 237 TTCGTCTTCACTTCCACGACTGCTTTGTT-AATGGTTGTGACGCATCCATCTTGTTAGAC 295
> Ahg485264 jgi|Araly1|485264|fgenesh2_kg.5__1256__AT3G49120.1
Length=1311
Score = 52.8 bits (28), Expect = 6e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 264 TTCGTCTTCACTTCCACGACTGCTTTGT 291
||||||||||||||||||||||||||||
Sbjct 359 TTCGTCTTCACTTCCACGACTGCTTTGT 386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47501154582
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5