BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G68870.1

Length=654
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg476013 jgi|Araly1|476013|fgenesh2_kg.2__1143__AT1G68870.1         737    0.0  


> Ahg476013 jgi|Araly1|476013|fgenesh2_kg.2__1143__AT1G68870.1
Length=581

 Score =  737 bits (399),  Expect = 0.0
 Identities = 468/498 (94%), Gaps = 17/498 (3%)
 Strand=Plus/Plus

Query  24   TTTTGTGTTAGCCATGGAGTCTCCAAGAATTCATGGAGGTGCTGAGGAGAAGAGTAGTTG  83
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    TTTTGTGTTAGCCATGGAGTCTCCAAGAATTCATGGAGGTGCTGAGGAGAAGAGTAGTTG  60

Query  84   CGAATCAGGATGGACCATGTACATAGAAGACACCTTT-CATGGAAACCACCACTCTGAAG  142
             ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct  61   TGAATCAGGATGGACCATGTACATAGAAGACA-CTTTCCATGGAAACCACCACTCTGAAG  119

Query  143  TTGTTTATGAAGA--A-GA--A----GATGATGGTTTCTCTGTAAAAGAGGTAgatgatg  193
            |||||||||||||  | ||  |    ||||||||||||| |||||||||||| |||||| 
Sbjct  120  TTGTTTATGAAGATGATGATGATGGTGATGATGGTTTCTGTGTAAAAGAGGTCGATGAT-  178

Query  194  atggtgatggtgatgaagatgatgatgatgacgatgatgatgatAGTAGTAACAATGAAA  253
            |  | |||| |||||  | ||||| |||||| || ||||||||||||||||||||||| |
Sbjct  179  A-AG-GATGATGATG--G-TGATGGTGATGAAGACGATGATGATAGTAGTAACAATGAGA  233

Query  254  GCGATGACTCAATGACTTCTGATGCATCCTCATGGCCTAGCACTCATCAGCCTCCAAGGA  313
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  234  GCGATGACTCAATGACTTCGGATGCATCCTCATGGCCTAGCACTCATCAGCCTCCAAGGA  293

Query  314  GCACCAAGAATCATGCAGCTGCAAAGAATAGTAATGCCAAACAAGTCAATAATCAGACAG  373
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| 
Sbjct  294  GCACCAAGAATCATGCAGCTGCAAAGAATAGTAATGCCAAACAAGTCAATCATCAGACAA  353

Query  374  AGAACAGAGTTCGTGACAGATTCAGCGATGAAGGAGAGGAATCTGAGCTCAAGGCTAGAA  433
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  354  AGAACAGAGTTCGTGACAGATTCAGCGATGAAGGAGAGGAATCTGAGCTCAAGGCCAGAA  413

Query  434  CAAGAACCACTGCAGCTAGTCGTGTCAAGGTGAGCAAAACCAAATAAGACTCATACTGGT  493
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  414  CAAGAACCACTGCAGCTAGTCGTGTCAAGGTGAGCAAAACCAAATAAGACTCATACTGGT  473

Query  494  TTTAGTTTCTATATCTAT  511
            ||||||||||||||||||
Sbjct  474  TTTAGTTTCTATATCTAT  491


 Score =  167 bits (90),  Expect = 1e-40
 Identities = 90/90 (100%), Gaps = 0/90 (0%)
 Strand=Plus/Plus

Query  558  ATACAGAATTCAGACCATGTAGTTGTTTCTACCTTCATTTGAGATGTATGTGTAATTGCA  617
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  492  ATACAGAATTCAGACCATGTAGTTGTTTCTACCTTCATTTGAGATGTATGTGTAATTGCA  551

Query  618  TTGCTTTCTTTAAAACAGGATTATGTTTTT  647
            ||||||||||||||||||||||||||||||
Sbjct  552  TTGCTTTCTTTAAAACAGGATTATGTTTTT  581



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23979314793


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5