BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68875.1
Length=713
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926180 jgi|Araly1|926180|scaffold_201741.1 721 0.0
> Ahg926180 jgi|Araly1|926180|scaffold_201741.1
Length=503
Score = 721 bits (390), Expect = 0.0
Identities = 466/502 (93%), Gaps = 7/502 (1%)
Strand=Plus/Plus
Query 12 ACCAAAAGAAGCAAAAATGACAGAACTCAAATGGATATGTATTTCATTCTCACTAACACT 71
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 6 ACCAAAATAAGCAAAAATGACAGAACTCAAAAGGATATGTATTTCATTCTCACTAACACT 65
Query 72 CTTGCTAAGCTTAGCAGTTGAAGGAGCCTTTAACATAAACCAGAAATGGTCTGGTGGAAG 131
|| || |||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 66 -TT--TACTCTTAGCCGTTGAAGGAGCCCTTAACATAAACCAGAAATGGTCTGGTGGAAG 122
Query 132 TCATTTTGGTTACGAGGGCGGGTTCTGTTTTCCCGGTCTCTGCATTGGAGGATCTGGTGG 191
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 123 TCATTTTGGTTACGAGGGTGGGTTCTGTTTTCCCGGTCTCTGCATTGGAGGATCTGGTGG 182
Query 192 TAGTAGAGTCCATTATGGCAGGGACCATTACGGTGGTGGAAGTCAATATAGAGGTGGTAT 251
||| |||||||||||||||||||||| ||||||||| ||| |||||||||||||||||
Sbjct 183 TAGCAGAGTCCATTATGGCAGGGACCGTTACGGTGGCCGAAATCAATATAGAGGTGGTAG 242
Query 252 TGGTTACAGAGAGACCATGTACTGCAAACCGTTGACTTGTTATGGTGGCTCATGTGATGC 311
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 243 TGGTTTCAGAGAGACCATGTACTGCAAACCGTTGTCTTGTTATGGTGGCTCATGTGATGC 302
Query 312 ACTCCATTTGCATTTAGACAAAGGGTTATATGAATCTCTCATACGCAATACTAAGACAGC 371
||||||||| ||||||||||||||||| |||||||||||| ||||||| || ||||||||
Sbjct 303 ACTCCATTTACATTTAGACAAAGGGTTGTATGAATCTCTCGTACGCAACACAAAGACAGC 362
Query 372 GAAACAATCGTCGACTGTTGATTTCAACATGCCAGAGACTTTGAAACACAATGTCATCAA 431
||||||| ||||||||||||||| |||||| |||||||| |||||||||||||||||||
Sbjct 363 GAAACAACCGTCGACTGTTGATTACAACATCCCAGAGACCTTGAAACACAATGTCATCAT 422
Query 432 CAATA-A--CTATGAGTTTAAGATGGCGAAAGAAGCTGCAATGGCACCACAGTCTAACTA 488
||| | | ||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 423 CAACAGAAACTATGAGTTCAAGATGGTGAAAGAAGCTGCAATGGCACCACAGTCTAACTA 482
Query 489 GCTAGCTAATGAAGTTGAGTCT 510
||||||||| |||||| |||||
Sbjct 483 GCTAGCTAAAGAAGTT-AGTCT 503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26228566896
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5