BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G68880.1

Length=725
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg476015 jgi|Araly1|476015|fgenesh2_kg.2__1145__AT1G68880.1         555    2e-157


> Ahg476015 jgi|Araly1|476015|fgenesh2_kg.2__1145__AT1G68880.1
Length=393

 Score =  555 bits (300),  Expect = 2e-157
 Identities = 360/390 (92%), Gaps = 0/390 (0%)
 Strand=Plus/Plus

Query  47   ATGGCTGGTTCTGTCTATAACCTTCCAAGTCAAAACCCTAATCCACAGTCTTTATTCCAA  106
            |||||||||| |||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct  1    ATGGCTGGTTTTGTCTATAACCTTCCATGTGAAAACCCTAATCCAAAGTCTTTATTCCAA  60

Query  107  ATCTTTGTTGATCGAGTACCACTTTCAAACTTGCCTGCCACGTCAGACGACTCTAGCCGG  166
            | ||||||||||||||| ||||||| |||||| ||||||||||| || ||||||||||||
Sbjct  61   ACCTTTGTTGATCGAGTTCCACTTTTAAACTTTCCTGCCACGTCCGAGGACTCTAGCCGG  120

Query  167  ACTGCAGAAGATAATGAGAGGAAGCGGAGAAGGAAGGTATCGAACCGCGAGTCAGCTCGG  226
            | |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct  121  AATGCAGAAGATGATGAGCGGAAGCGGAGAAGGAAGGTATCGAACCGCGAGTCAGCTAGG  180

Query  227  AGATCGCGTATGCGGAAACAGCGTCACATGGAAGAACTGTGGTCCATGCTTGTTCAACTC  286
            ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct  181  AGATCACGTATGCGGAAACAGCGCCACATGGACGAACTGTGGTCCATGCTTGTTCAGCTC  240

Query  287  ATCAATAAGAACAAATCTCTAGTCGATGAGCTAAGCCAAGCCAGGGAATGTTACGAGAAG  346
            ||||| |||||||||| |||||||||||||||||||| |||||||||  |||||||||||
Sbjct  241  ATCAACAAGAACAAATGTCTAGTCGATGAGCTAAGCCGAGCCAGGGAGGGTTACGAGAAG  300

Query  347  GTTATAGAAGAGAACATGAAACTTCGAGAGGAAAACTCCAAGTCGAGGAAGATGATTGGT  406
            ||||||||||||||||||||||||||||| ||||| |||||||||||| ||| |||||||
Sbjct  301  GTTATAGAAGAGAACATGAAACTTCGAGAAGAAAATTCCAAGTCGAGGGAGACGATTGGT  360

Query  407  GAGATCGGGCTTAATAGGTTTCTTAGCGTA  436
            ||||||||||||||| |||||| || ||||
Sbjct  361  GAGATCGGGCTTAATTGGTTTCCTAACGTA  390



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26686041900


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5