BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68905.1
Length=288
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476017 jgi|Araly1|476017|fgenesh2_kg.2__1147__AT1G68905.1 274 2e-73
> Ahg476017 jgi|Araly1|476017|fgenesh2_kg.2__1147__AT1G68905.1
Length=273
Score = 274 bits (148), Expect = 2e-73
Identities = 247/290 (85%), Gaps = 26/290 (9%)
Strand=Plus/Plus
Query 1 ATGGAGAAAACGTCTCTCAAGCTTATCTTCTTGTTCTCCCTCACAGTCATAGCATTTTGT 60
||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1 ATGGAGAAAACATCTCTCAAGCTTGTCTTCTTGTTCTCCCTCACAATCATAGCATTTTGC 60
Query 61 TCATCTTTAGGTGATGCTAGAGAGATGGTGAAAGCAGAAGTGAATTGCATCGGCGGCAAA 120
|| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 TCGTCTTTAGGTGATGCCAGAGAGATGGTGAAAGAAGAAGTGAATTGCATCGGCGGCAAA 120
Query 121 TGTCCTGAAGGAAAGAAGAACTGTAATTGCATGCCACCGATAGCACATGTGATGGATGAT 180
||||| ||||||||||||||||||||||| |||| |||||||||||| | | |
Sbjct 121 TGTCCCAAAGGAAAGAAGAACTGTAATTGCTTGCCGCCGATAGCACAT---A---A--A- 171
Query 181 ATCAGGCCTTGCAATACAGATGGTGACTGCTACAAGTTCTGTCCTAGGGAATGCGAGCTT 240
|| || | ||| | || |||| |||||| ||||||||||||||||||||||
Sbjct 172 AT--GGAC----AAT-C-GAC-----CTGCAACAAGTACTGTCCTAGGGAATGCGAGCTT 218
Query 241 GGAACTTGT-TACTGT-CGGTGTGATTATGGTTGTACATGTACCTGTTGA 288
||||| ||| | |||| || ||||| ||||||||||||||||||||||||
Sbjct 219 GGAACCTGTGT-CTGTTCG-TGTGACTATGGTTGTACATGTACCTGTTGA 266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10073075496
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5