BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G68907.1

Length=291
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg908471 jgi|Araly1|908471|Al_scaffold_0002_1552                    433    4e-121
  Ahg476017 jgi|Araly1|476017|fgenesh2_kg.2__1147__AT1G68905.1         191    3e-48 


> Ahg908471 jgi|Araly1|908471|Al_scaffold_0002_1552
Length=291

 Score =  433 bits (234),  Expect = 4e-121
 Identities = 274/293 (94%), Gaps = 4/293 (1%)
 Strand=Plus/Plus

Query  1    ATGGAGAAAACGTCTCTCAAGCTTGTCTTCTTGTTCTCCCTCACAGTCATAGCATTGTGT  60
            |||||||||| |||||||||||| ||||||||||||||||||||||||||| |||| |||
Sbjct  1    ATGGAGAAAATGTCTCTCAAGCTCGTCTTCTTGTTCTCCCTCACAGTCATATCATTTTGT  60

Query  61   TTGTCTTTGAGTGCCGCGAGAGAGATGGCGAAAGAAGAAGTGAATTGCATAGGCGGCCAT  120
            |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  61   TTGTCTTTGAGTGCCGCGAGGGAGATGGCGAAAGAAGAAGTGAATTGCATCGGCGGCCAT  120

Query  121  TGTCCTGATGGAAAGAAGGACTGTAACTGCTTGCCTCTTATAGCACCAACAATGGACATA  180
            |||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||| 
Sbjct  121  TGTCCTGATGGAAAGAAGAACTGTAACTGCTTGCTTCCTATAGCACCAACAATGGACATT  180

Query  181  TATGAGACCAATG-AGTCTTGCCGCACAGATAACGAATGCATCAAGTACTGTCCTAAGGG  239
            ||||||||||||| | ||||||| |  ||||||||||||||||||||||||||||||| |
Sbjct  181  TATGAGACCAATGCA-TCTTGCCTCGTAGATAACGAATGCATCAAGTACTGTCCTAAGAG  239

Query  240  CTGCAAGATTGTTGA-CTGTAATTTTGGAACCTGTTTGTGTGAGTACTGTTAA  291
            |||||||||||| || |||||||||||||||||||||||||||||| ||||||
Sbjct  240  CTGCAAGATTGT-GAACTGTAATTTTGGAACCTGTTTGTGTGAGTATTGTTAA  291


> Ahg476017 jgi|Araly1|476017|fgenesh2_kg.2__1147__AT1G68905.1
Length=273

 Score =  191 bits (103),  Expect = 3e-48
 Identities = 155/180 (86%), Gaps = 4/180 (2%)
 Strand=Plus/Plus

Query  1    ATGGAGAAAACGTCTCTCAAGCTTGTCTTCTTGTTCTCCCTCACAGTCATAGCATTGTGT  60
            ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| || 
Sbjct  1    ATGGAGAAAACATCTCTCAAGCTTGTCTTCTTGTTCTCCCTCACAATCATAGCATTTTGC  60

Query  61   TTGTCTTTGAG-TGCCGCGAGAGAGATGGCGAAAGAAGAAGTGAATTGCATAGGCGGCCA  119
            | |||||| || ||  || |||||||||| ||||||||||||||||||||| |||||| |
Sbjct  61   TCGTCTTT-AGGTGATGCCAGAGAGATGGTGAAAGAAGAAGTGAATTGCATCGGCGGCAA  119

Query  120  TTGTCCTGATGGAAAGAAGGACTGTAACTGCTTGCCTCTTATAGCACC-AACAATGGACA  178
             |||||  | ||||||||| ||||||| |||||||| |  |||||||  || ||||||||
Sbjct  120  ATGTCCCAAAGGAAAGAAGAACTGTAATTGCTTGCCGCCGATAGCACATAA-AATGGACA  178



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10187542263


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5