BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68920.1
Length=2300
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476021 jgi|Araly1|476021|fgenesh2_kg.2__1151__AT1G68920.3 3360 0.0
Ahg472791 jgi|Araly1|472791|fgenesh2_kg.1__2745__AT1G26260.3 300 4e-80
> Ahg476021 jgi|Araly1|476021|fgenesh2_kg.2__1151__AT1G68920.3
Length=2287
Score = 3360 bits (1819), Expect = 0.0
Identities = 2148/2301 (93%), Gaps = 46/2301 (2%)
Strand=Plus/Plus
Query 1 GCAAATTATAATCCTTGAATACTTTGGCTATGGCGGTGTTTATGTTTAATGATCAAAAAG 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 GCAAATTATAATGCTTGAATACTTTGGCTATGGCGGTGTTTATGTTTAATGATCAAAAAG 62
Query 61 CTCTGTTTTTTATGCAAGCGTGGGTATAAAATCCAGttccttttccga---t-ttttt-g 115
||||||||||||||||||||||||||| |||||||| ||||||| || | |||||
Sbjct 63 CTCTGTTTTTTATGCAAGCGTGGGTAT-AAATCCAGAACCTTTTCTGATTTTATTTTTCT 121
Query 116 t-t-c-ttc--cttcttcttcacttcc----tttttttcttctccatttctCAAAAAGGC 166
| | | ||| |||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 122 TCTCCTTTCTTCTTCTTCTTCACTTCCTTTTTTTTTTTCTTCTCCATTTCTAAAAAAAGC 181
Query 167 CACTCCTTTGCTTATCTTTCTCTCTCTCTGCAGCTGAAGAACAGAGAAAAAGGGTTTTTT 226
||||| ||||||||||||| |||||||||||||||||||||||||| ||||||| |||||
Sbjct 182 CACTCGTTTGCTTATCTTTTTCTCTCTCTGCAGCTGAAGAACAGAG-AAAAGGG-TTTTT 239
Query 227 ATTGTCTGACCCAAAGGACCCAGTTTCAATTCAGCTTTTGTTGTTAGAAATTGAGGTAAA 286
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 240 ATTATCTGACCCAAAGGACCCAGTTTCAATTCAGCTTTTGTTGTTAGAAATTGAGGAAAA 299
Query 287 AGATTCAAAATTTGTTCAGAAA--AGTGGCACAGATTCTGAAAAATTAATATCTTTCTTC 344
|||||||||||||||||| ||| |||||||| |||||| || || |||||||||||
Sbjct 300 AGATTCAAAATTTGTTCATAAAGTGGTGGCACATATTCTGTAATATGGGTATCTTTCTTC 359
Query 345 TCACTCTTTTAGCTCGATTCTAAGCTTAAATCTGGTTTAGGGTTTTTGGAGTTTGTACTG 404
| ||||||||||||||||| | ||||||||||||||||||||||||||||||||| || |
Sbjct 360 TGACTCTTTTAGCTCGATTATTAGCTTAAATCTGGTTTAGGGTTTTTGGAGTTTGCACGG 419
Query 405 ATAAAGCATGATCCTTTTTGTCTTCCGTTGACTGATTCTGTTCCTTTTCTCAATATATTG 464
||||| |||||||||||||||||||||||||||||| ||||||||||||| ||| || ||
Sbjct 420 ATAAATCATGATCCTTTTTGTCTTCCGTTGACTGATACTGTTCCTTTTCTGAATCTAGTG 479
Query 465 ATTTGGGCTTCTCTTGTTCTTCATCGAATCATTGGTCTTCAAGGTGAATGTGTTTGTGTA 524
||||||| |||||||||||||||| ||||||||| ||||||||||| |||| | | |
Sbjct 480 ATTTGGGTTTCTCTTGTTCTTCATTGAATCATTGTTCTTCAAGGTGGATGTATCACT-AA 538
Query 525 GTGGC-AAGTCTT-GTTGGTTTGTAGTGGTTTTGATCTTGGA-GATTTTCTGATTAGTGA 581
| |||| || |||||||||||||||||||||||||||| | |||| ||| | | |
Sbjct 539 AAAACGAAGT-TTGGTTGGTTTGTAGTGGTTTTGATCTTGGAGGGTTTT-TGA-T--T-A 592
Query 582 GTGGTGTTCATCAAGTATTAGAA--GAAGATGGATTTAAGTGCGAAAGATGAGTTTTCAG 639
|||||||||||||||| |||||| |||||||||| |||||| |||||||||||||||||
Sbjct 593 GTGGTGTTCATCAAGTTTTAGAATTGAAGATGGATATAAGTGAGAAAGATGAGTTTTCAG 652
Query 640 CAGAGAAGAGGAATCCTGATAACTATGATTCT-GTTAATAATCCGTCTGGAGATTGGCGA 698
||||||||||||||||||||| |||||||| | |||| ||||||||||||||||||||||
Sbjct 653 CAGAGAAGAGGAATCCTGATAGCTATGATT-TGGTTAGTAATCCGTCTGGAGATTGGCGA 711
Query 699 GTTGATTCATATCCTTCAGAGAATCTGATTTCAGCTGGTCCTGCGTCTTGTTCTCCTTCT 758
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 712 GTTGATTCATATCCTTCAGAGAATCTGATATCAGCTGGTCCTGCGTCTTGTTCTCCATCT 771
Query 759 CAGATGATGGATTCATTTGGGCAAACTCTTTGGTATGATCCCACGAGTGTTCAGGCTGTT 818
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 CAGATGATGGATTCATTTGGGCAAACTCTTTGGTATGATCCCACGAGTGTTCAGGCTGTG 831
Query 819 GGTTATGCCGGTTTTAATGGTGGTAATGCTTCGTCTTCTTCGTTTAGGGGTAGTATTGAT 878
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 832 GGTTATGGCGGTTTTAATGGTGGTAATGCTTCGTCTTCTTCGTTTAGGGGTAATATTGAT 891
Query 879 AGATCTCTTGAAATGGGTTGGAATCTGCCTAATTTGTTGCCTCCTAAAGGCAATGGTCTT 938
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 892 AGATCTCTTGAAATGGGTTGGAACCTGCCTAATTTGTTGCCTCCTAAAGGCAATGGTCTT 951
Query 939 TTCTTACCGAATGCGAGTAGTTTCCTTCCTCCGAGTATGGCTCAGTTCCCGGCTGATTCA 998
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 TTCCTGCCGAATGCGAGTAGTTTCCTTCCTCCGAGTATGGCTCAGTTCCCGGCTGATTCA 1011
Query 999 GGTTTTATAGAGCGTGCAGCGAGGTTTTCGCTCTTTAGCGGTGGGAATTTTAGTGATATG 1058
|| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1012 GGGTTTATAGAGCGTGCTGCGAGGTTTTCGCTCTTTAGTGGTGGGAATTTTAGTGATATG 1071
Query 1059 GTGAATCAACCACTTGGGAATTCTGAGGCTATTGGTTTGTTTCTTCAAGGTGGTGGAACA 1118
||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct 1072 GTGAATCAACCACTTGGGAATCCTGAGTCGATTGGTTTGTTTCTTCAAGGTGGTGGAACA 1131
Query 1119 ATGCAAGGGCAGTGTCAAAGTAATGAACTTAATGTTGGTGAACCTCACAATGATGTATCT 1178
|||||||||| ||||||| || |||||| |||||||||||| ||||||||||||||||||
Sbjct 1132 ATGCAAGGGCTGTGTCAATGTGATGAACATAATGTTGGTGATCCTCACAATGATGTATCT 1191
Query 1179 GTAGCAGTGAAAGAATCAACTGTTAGATCTAGTGAACAAGCTAAACCGAATGTTCCTGGA 1238
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1192 ACAGCAGTGAAAGACCCAACTGTTAGATCTTCTGAACAAGCTAAACCGAATGTTCCTGGA 1251
Query 1239 TCGGGCAATGTATCCGAGGATACTCAGTCTAGTGGTGGTAATGGTCAGAAAGGCAGAGAA 1298
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1252 TCGGGCAATGTATCCGAGGATACTCAGTCTAGTGGTGGTAACGGTCGGAAAGGCAGAGAA 1311
Query 1299 ACCTCTTCCAACACAAAGAAGAGGAAAAGAAATGGGCAGAAGAACTCTGAAGCAGCTCAA 1358
|| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1312 ACTTCTTCCAACACAAAGAAGAGGAAAAGAAATGGGCAGGTGAATTCTGAAGCAGCTCAG 1371
Query 1359 TCACACAGATCCCAGCAGTCTGAGGAAGAACCAGACAACAATGGTGATGAAAAGCGCAAT 1418
||||||||||| ||||| |||||||||||||||||||| ||||||||| ||||||| |||
Sbjct 1372 TCACACAGATCTCAGCAATCTGAGGAAGAACCAGACAATAATGGTGATAAAAAGCGGAAT 1431
Query 1419 GA-TGAGCAAAGTCCAAATTCACCTGGAAAGAAGTCAAACAGTGGGAAACAACAGGGCAA 1477
| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||
Sbjct 1432 -AGTGAGCAAAGTCCAAATTCACCTGGAAACAAGACAAACAGTGGGAAACAACAGGGTAA 1490
Query 1478 ACAAAGTTCTGATCCTCCAAAAGATGGATATATTCATGTACGGGCACGAAGAGGCCAGGC 1537
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1491 ACAAAGTTCTGATCCTCCAAAAGATGGATATATTCATGTGCGGGCACGAAGAGGCCAGGC 1550
Query 1538 CACAAATAGCCATAGTCTTGCAGAAAGAGTTAGGAGAGAAAAAATTAGTGAAAGGATGAA 1597
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1551 TACAAATAGCCATAGTCTTGCAGAAAGGGTTAGGAGAGAAAAAATTAGTGAAAGGATGAA 1610
Query 1598 GTTTCTTCAAGATCTAGTACCGGGTTGCAACAAGGTGACTGGGAAGGCAGTTATGCTTGA 1657
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 GTTTCTTCAAGATCTTGTACCGGGTTGCAACAAGGTGACTGGGAAGGCAGTTATGCTTGA 1670
Query 1658 CGAAATCATAAACTACGTACAATCACTACAACGCCAAGTTGAGTTTTTATCGATGAAACT 1717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 CGAAATCATAAACTACGTACAATCACTACAACGCCAAGTTGAGTTTTTATCGATGAAACT 1730
Query 1718 TGCAACTGTGAACCCACAAATGGACTTTAACCTTGAAGGTCTTCTTGCAAAAGATGCACT 1777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1731 TGCAACTGTGAACCCACAAATGGACTTTAACCTTGAAGGTCTTCTTGCAAAAGATGCACT 1790
Query 1778 TCAACTACGAGCTGGTTCTTCATCTAC-A-A-CACCATTC-CCACCAAATATGTCAATGG 1833
||||||||||||||||||||||||||| | | |||||||| || ||||||||| ||||||
Sbjct 1791 TCAACTACGAGCTGGTTCTTCATCTACTACAACACCATTCACC-CCAAATATGGCAATGG 1849
Query 1834 CTTATCCTCCTCTACCTCATGGATTCATGCAACAAACTCTTTCCAGCATTGGAAGGACCA 1893
|||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1850 CTTATCCTCCTCTACCACATGGATTCATGCAACAAACCCTTTCCAGCATCGGAAGGACCA 1909
Query 1894 TTACCTCTCCATTGTCTCCTATGAATGGTGGATTCAAGCGACAGGAAACAAATGGATGGG 1953
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1910 TTAGCTCTCCATTGTCTTCTATGAATGGTGGATTCAAGCGACAGGAAACAAATGGATGGG 1969
Query 1954 AGGGTGATTTGCAAAATGTGATCCACATTAACTATGGAGCTGGTGATGTCACACCTGACC 2013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1970 AGGGTGATTTGCAAAATGTGATCCACATTAACTATGGAGCTGGTGATGTCACACCTGACC 2029
Query 2014 CTCAAGCAGCAGCTACAGCATCTCTTCCAGCTGCAAATATGAAGGTTGAGCCATGATATT 2073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2030 CTCAAGCAGCAGCTACAGCATCTCTTCCAGCTGCAAATATGAAGGTTGAGCCATGATATT 2089
Query 2074 TCGTCCTGTTAGATAGAATATTAAATTATTGTAATCttttttatttatt-tatttaAA-G 2131
|| || |||||||||||||||||||||||||||||||||||| ||| || | |||||| |
Sbjct 2090 TCTTCTTGTTAGATAGAATATTAAATTATTGTAATCTTTTTTTTTTTTTCTTTTTAAAAG 2149
Query 2132 TTGCTATATGTACTATATTGTAATGATGTTACTATTAACGAATACGATACTTA-GACTAA 2190
|| |||||||||||||||| ||||||||||||||||||||||||||||||| | |||||
Sbjct 2150 TTACTATATGTACTATATTATAATGATGTTACTATTAACGAATACGATACT-ACGACTA- 2207
Query 2191 ACTACTACTAAGCGTTTGAGATTAGTGGAAGAAGAGTATAAACTGTGAACACCAACAATG 2250
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2208 -CTACTACTAAGCCTTTGAGATTAGTGGAAGAAGAGTATAAATTGTGAACACCAACAATG 2266
Query 2251 CAAAATAGTTTTGTATAAGTC 2271
|||||||||||||||||||||
Sbjct 2267 CAAAATAGTTTTGTATAAGTC 2287
> Ahg472791 jgi|Araly1|472791|fgenesh2_kg.1__2745__AT1G26260.3
Length=1287
Score = 300 bits (162), Expect = 4e-80
Identities = 263/311 (85%), Gaps = 10/311 (3%)
Strand=Plus/Plus
Query 1476 AAACAAAG-TTCTGATCCTCCAAAAGATGGATATATT--CATGTACGGGCACGAAGAGGC 1532
|||| ||| || |||| || ||| ||||| |||||| |||| | ||||||| ||||||
Sbjct 463 AAAC-AAGCTTATGATTCTTTAAAGGATGGGTATATTCACATG-A-GGGCACGGAGAGGC 519
Query 1533 CAGGCCACAAATAGCCATAGTCTTGCAGAAAGAGTTAGGAGAGAAAAAATTAGTGAAAGG 1592
||||| || ||||| || ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 520 CAGGCTACTAATAGTCACAGTCTTGCAGAAAGAGTAAGGAGAGAAAAAATCAGTGAAAGG 579
Query 1593 ATGAAGTTTCTT-CAAGATCTAGTACCGGGTTGCAACAAGGTGACTGGGAAGGCAGTTAT 1651
|||||| ||||| |||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 580 ATGAAG-TTCTTGCAAGATCTTGTACCGGGTTGCGACAAGGTGACTGGGAAGGCAGTTAT 638
Query 1652 GCTTGACGAAATCATAAACTACGTACAATCACTACAACGCCAAGTT-GAGTTTTTATCGA 1710
||| ||||||||||| ||||| || |||||||| ||| |||| | | |||||||||||||
Sbjct 639 GCTCGACGAAATCATTAACTATGTGCAATCACTTCAATGCCA-GATCGAGTTTTTATCGA 697
Query 1711 TGAAACTTGCAACTGTGAACCCACAAATGGACTTTAACCTTGAAGGTCTTCTTGCAAAAG 1770
|||||||| | ||||||| || | || |||||||| ||| | || ||||||||||
Sbjct 698 TGAAACTTTCGGCTGTGAATCCTGTGCTCGATTTTAACCTCGAAAGCCTCCTTGCAAAAG 757
Query 1771 ATGCACTTCAA 1781
|||| ||||||
Sbjct 758 ATGCTCTTCAA 768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86617217130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5