BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G68920.1 Length=2300 Score E Sequences producing significant alignments: (Bits) Value Ahg476021 jgi|Araly1|476021|fgenesh2_kg.2__1151__AT1G68920.3 3360 0.0 Ahg472791 jgi|Araly1|472791|fgenesh2_kg.1__2745__AT1G26260.3 300 4e-80 > Ahg476021 jgi|Araly1|476021|fgenesh2_kg.2__1151__AT1G68920.3 Length=2287 Score = 3360 bits (1819), Expect = 0.0 Identities = 2148/2301 (93%), Gaps = 46/2301 (2%) Strand=Plus/Plus Query 1 GCAAATTATAATCCTTGAATACTTTGGCTATGGCGGTGTTTATGTTTAATGATCAAAAAG 60 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3 GCAAATTATAATGCTTGAATACTTTGGCTATGGCGGTGTTTATGTTTAATGATCAAAAAG 62 Query 61 CTCTGTTTTTTATGCAAGCGTGGGTATAAAATCCAGttccttttccga---t-ttttt-g 115 ||||||||||||||||||||||||||| |||||||| ||||||| || | ||||| Sbjct 63 CTCTGTTTTTTATGCAAGCGTGGGTAT-AAATCCAGAACCTTTTCTGATTTTATTTTTCT 121 Query 116 t-t-c-ttc--cttcttcttcacttcc----tttttttcttctccatttctCAAAAAGGC 166 | | | ||| |||||||||||||||| |||||||||||||||||||| ||||| || Sbjct 122 TCTCCTTTCTTCTTCTTCTTCACTTCCTTTTTTTTTTTCTTCTCCATTTCTAAAAAAAGC 181 Query 167 CACTCCTTTGCTTATCTTTCTCTCTCTCTGCAGCTGAAGAACAGAGAAAAAGGGTTTTTT 226 ||||| ||||||||||||| |||||||||||||||||||||||||| ||||||| ||||| Sbjct 182 CACTCGTTTGCTTATCTTTTTCTCTCTCTGCAGCTGAAGAACAGAG-AAAAGGG-TTTTT 239 Query 227 ATTGTCTGACCCAAAGGACCCAGTTTCAATTCAGCTTTTGTTGTTAGAAATTGAGGTAAA 286 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 240 ATTATCTGACCCAAAGGACCCAGTTTCAATTCAGCTTTTGTTGTTAGAAATTGAGGAAAA 299 Query 287 AGATTCAAAATTTGTTCAGAAA--AGTGGCACAGATTCTGAAAAATTAATATCTTTCTTC 344 |||||||||||||||||| ||| |||||||| |||||| || || ||||||||||| Sbjct 300 AGATTCAAAATTTGTTCATAAAGTGGTGGCACATATTCTGTAATATGGGTATCTTTCTTC 359 Query 345 TCACTCTTTTAGCTCGATTCTAAGCTTAAATCTGGTTTAGGGTTTTTGGAGTTTGTACTG 404 | ||||||||||||||||| | ||||||||||||||||||||||||||||||||| || | Sbjct 360 TGACTCTTTTAGCTCGATTATTAGCTTAAATCTGGTTTAGGGTTTTTGGAGTTTGCACGG 419 Query 405 ATAAAGCATGATCCTTTTTGTCTTCCGTTGACTGATTCTGTTCCTTTTCTCAATATATTG 464 ||||| |||||||||||||||||||||||||||||| ||||||||||||| ||| || || Sbjct 420 ATAAATCATGATCCTTTTTGTCTTCCGTTGACTGATACTGTTCCTTTTCTGAATCTAGTG 479 Query 465 ATTTGGGCTTCTCTTGTTCTTCATCGAATCATTGGTCTTCAAGGTGAATGTGTTTGTGTA 524 ||||||| |||||||||||||||| ||||||||| ||||||||||| |||| | | | Sbjct 480 ATTTGGGTTTCTCTTGTTCTTCATTGAATCATTGTTCTTCAAGGTGGATGTATCACT-AA 538 Query 525 GTGGC-AAGTCTT-GTTGGTTTGTAGTGGTTTTGATCTTGGA-GATTTTCTGATTAGTGA 581 | |||| || |||||||||||||||||||||||||||| | |||| ||| | | | Sbjct 539 AAAACGAAGT-TTGGTTGGTTTGTAGTGGTTTTGATCTTGGAGGGTTTT-TGA-T--T-A 592 Query 582 GTGGTGTTCATCAAGTATTAGAA--GAAGATGGATTTAAGTGCGAAAGATGAGTTTTCAG 639 |||||||||||||||| |||||| |||||||||| |||||| ||||||||||||||||| Sbjct 593 GTGGTGTTCATCAAGTTTTAGAATTGAAGATGGATATAAGTGAGAAAGATGAGTTTTCAG 652 Query 640 CAGAGAAGAGGAATCCTGATAACTATGATTCT-GTTAATAATCCGTCTGGAGATTGGCGA 698 ||||||||||||||||||||| |||||||| | |||| |||||||||||||||||||||| Sbjct 653 CAGAGAAGAGGAATCCTGATAGCTATGATT-TGGTTAGTAATCCGTCTGGAGATTGGCGA 711 Query 699 GTTGATTCATATCCTTCAGAGAATCTGATTTCAGCTGGTCCTGCGTCTTGTTCTCCTTCT 758 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 712 GTTGATTCATATCCTTCAGAGAATCTGATATCAGCTGGTCCTGCGTCTTGTTCTCCATCT 771 Query 759 CAGATGATGGATTCATTTGGGCAAACTCTTTGGTATGATCCCACGAGTGTTCAGGCTGTT 818 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 772 CAGATGATGGATTCATTTGGGCAAACTCTTTGGTATGATCCCACGAGTGTTCAGGCTGTG 831 Query 819 GGTTATGCCGGTTTTAATGGTGGTAATGCTTCGTCTTCTTCGTTTAGGGGTAGTATTGAT 878 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 832 GGTTATGGCGGTTTTAATGGTGGTAATGCTTCGTCTTCTTCGTTTAGGGGTAATATTGAT 891 Query 879 AGATCTCTTGAAATGGGTTGGAATCTGCCTAATTTGTTGCCTCCTAAAGGCAATGGTCTT 938 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 892 AGATCTCTTGAAATGGGTTGGAACCTGCCTAATTTGTTGCCTCCTAAAGGCAATGGTCTT 951 Query 939 TTCTTACCGAATGCGAGTAGTTTCCTTCCTCCGAGTATGGCTCAGTTCCCGGCTGATTCA 998 ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 952 TTCCTGCCGAATGCGAGTAGTTTCCTTCCTCCGAGTATGGCTCAGTTCCCGGCTGATTCA 1011 Query 999 GGTTTTATAGAGCGTGCAGCGAGGTTTTCGCTCTTTAGCGGTGGGAATTTTAGTGATATG 1058 || |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 1012 GGGTTTATAGAGCGTGCTGCGAGGTTTTCGCTCTTTAGTGGTGGGAATTTTAGTGATATG 1071 Query 1059 GTGAATCAACCACTTGGGAATTCTGAGGCTATTGGTTTGTTTCTTCAAGGTGGTGGAACA 1118 ||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||| Sbjct 1072 GTGAATCAACCACTTGGGAATCCTGAGTCGATTGGTTTGTTTCTTCAAGGTGGTGGAACA 1131 Query 1119 ATGCAAGGGCAGTGTCAAAGTAATGAACTTAATGTTGGTGAACCTCACAATGATGTATCT 1178 |||||||||| ||||||| || |||||| |||||||||||| |||||||||||||||||| Sbjct 1132 ATGCAAGGGCTGTGTCAATGTGATGAACATAATGTTGGTGATCCTCACAATGATGTATCT 1191 Query 1179 GTAGCAGTGAAAGAATCAACTGTTAGATCTAGTGAACAAGCTAAACCGAATGTTCCTGGA 1238 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 1192 ACAGCAGTGAAAGACCCAACTGTTAGATCTTCTGAACAAGCTAAACCGAATGTTCCTGGA 1251 Query 1239 TCGGGCAATGTATCCGAGGATACTCAGTCTAGTGGTGGTAATGGTCAGAAAGGCAGAGAA 1298 ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| Sbjct 1252 TCGGGCAATGTATCCGAGGATACTCAGTCTAGTGGTGGTAACGGTCGGAAAGGCAGAGAA 1311 Query 1299 ACCTCTTCCAACACAAAGAAGAGGAAAAGAAATGGGCAGAAGAACTCTGAAGCAGCTCAA 1358 || |||||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 1312 ACTTCTTCCAACACAAAGAAGAGGAAAAGAAATGGGCAGGTGAATTCTGAAGCAGCTCAG 1371 Query 1359 TCACACAGATCCCAGCAGTCTGAGGAAGAACCAGACAACAATGGTGATGAAAAGCGCAAT 1418 ||||||||||| ||||| |||||||||||||||||||| ||||||||| ||||||| ||| Sbjct 1372 TCACACAGATCTCAGCAATCTGAGGAAGAACCAGACAATAATGGTGATAAAAAGCGGAAT 1431 Query 1419 GA-TGAGCAAAGTCCAAATTCACCTGGAAAGAAGTCAAACAGTGGGAAACAACAGGGCAA 1477 | ||||||||||||||||||||||||||| ||| |||||||||||||||||||||| || Sbjct 1432 -AGTGAGCAAAGTCCAAATTCACCTGGAAACAAGACAAACAGTGGGAAACAACAGGGTAA 1490 Query 1478 ACAAAGTTCTGATCCTCCAAAAGATGGATATATTCATGTACGGGCACGAAGAGGCCAGGC 1537 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1491 ACAAAGTTCTGATCCTCCAAAAGATGGATATATTCATGTGCGGGCACGAAGAGGCCAGGC 1550 Query 1538 CACAAATAGCCATAGTCTTGCAGAAAGAGTTAGGAGAGAAAAAATTAGTGAAAGGATGAA 1597 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1551 TACAAATAGCCATAGTCTTGCAGAAAGGGTTAGGAGAGAAAAAATTAGTGAAAGGATGAA 1610 Query 1598 GTTTCTTCAAGATCTAGTACCGGGTTGCAACAAGGTGACTGGGAAGGCAGTTATGCTTGA 1657 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1611 GTTTCTTCAAGATCTTGTACCGGGTTGCAACAAGGTGACTGGGAAGGCAGTTATGCTTGA 1670 Query 1658 CGAAATCATAAACTACGTACAATCACTACAACGCCAAGTTGAGTTTTTATCGATGAAACT 1717 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1671 CGAAATCATAAACTACGTACAATCACTACAACGCCAAGTTGAGTTTTTATCGATGAAACT 1730 Query 1718 TGCAACTGTGAACCCACAAATGGACTTTAACCTTGAAGGTCTTCTTGCAAAAGATGCACT 1777 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1731 TGCAACTGTGAACCCACAAATGGACTTTAACCTTGAAGGTCTTCTTGCAAAAGATGCACT 1790 Query 1778 TCAACTACGAGCTGGTTCTTCATCTAC-A-A-CACCATTC-CCACCAAATATGTCAATGG 1833 ||||||||||||||||||||||||||| | | |||||||| || ||||||||| |||||| Sbjct 1791 TCAACTACGAGCTGGTTCTTCATCTACTACAACACCATTCACC-CCAAATATGGCAATGG 1849 Query 1834 CTTATCCTCCTCTACCTCATGGATTCATGCAACAAACTCTTTCCAGCATTGGAAGGACCA 1893 |||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||| Sbjct 1850 CTTATCCTCCTCTACCACATGGATTCATGCAACAAACCCTTTCCAGCATCGGAAGGACCA 1909 Query 1894 TTACCTCTCCATTGTCTCCTATGAATGGTGGATTCAAGCGACAGGAAACAAATGGATGGG 1953 ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1910 TTAGCTCTCCATTGTCTTCTATGAATGGTGGATTCAAGCGACAGGAAACAAATGGATGGG 1969 Query 1954 AGGGTGATTTGCAAAATGTGATCCACATTAACTATGGAGCTGGTGATGTCACACCTGACC 2013 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1970 AGGGTGATTTGCAAAATGTGATCCACATTAACTATGGAGCTGGTGATGTCACACCTGACC 2029 Query 2014 CTCAAGCAGCAGCTACAGCATCTCTTCCAGCTGCAAATATGAAGGTTGAGCCATGATATT 2073 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2030 CTCAAGCAGCAGCTACAGCATCTCTTCCAGCTGCAAATATGAAGGTTGAGCCATGATATT 2089 Query 2074 TCGTCCTGTTAGATAGAATATTAAATTATTGTAATCttttttatttatt-tatttaAA-G 2131 || || |||||||||||||||||||||||||||||||||||| ||| || | |||||| | Sbjct 2090 TCTTCTTGTTAGATAGAATATTAAATTATTGTAATCTTTTTTTTTTTTTCTTTTTAAAAG 2149 Query 2132 TTGCTATATGTACTATATTGTAATGATGTTACTATTAACGAATACGATACTTA-GACTAA 2190 || |||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| Sbjct 2150 TTACTATATGTACTATATTATAATGATGTTACTATTAACGAATACGATACT-ACGACTA- 2207 Query 2191 ACTACTACTAAGCGTTTGAGATTAGTGGAAGAAGAGTATAAACTGTGAACACCAACAATG 2250 |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2208 -CTACTACTAAGCCTTTGAGATTAGTGGAAGAAGAGTATAAATTGTGAACACCAACAATG 2266 Query 2251 CAAAATAGTTTTGTATAAGTC 2271 ||||||||||||||||||||| Sbjct 2267 CAAAATAGTTTTGTATAAGTC 2287 > Ahg472791 jgi|Araly1|472791|fgenesh2_kg.1__2745__AT1G26260.3 Length=1287 Score = 300 bits (162), Expect = 4e-80 Identities = 263/311 (85%), Gaps = 10/311 (3%) Strand=Plus/Plus Query 1476 AAACAAAG-TTCTGATCCTCCAAAAGATGGATATATT--CATGTACGGGCACGAAGAGGC 1532 |||| ||| || |||| || ||| ||||| |||||| |||| | ||||||| |||||| Sbjct 463 AAAC-AAGCTTATGATTCTTTAAAGGATGGGTATATTCACATG-A-GGGCACGGAGAGGC 519 Query 1533 CAGGCCACAAATAGCCATAGTCTTGCAGAAAGAGTTAGGAGAGAAAAAATTAGTGAAAGG 1592 ||||| || ||||| || ||||||||||||||||| |||||||||||||| ||||||||| Sbjct 520 CAGGCTACTAATAGTCACAGTCTTGCAGAAAGAGTAAGGAGAGAAAAAATCAGTGAAAGG 579 Query 1593 ATGAAGTTTCTT-CAAGATCTAGTACCGGGTTGCAACAAGGTGACTGGGAAGGCAGTTAT 1651 |||||| ||||| |||||||| |||||||||||| ||||||||||||||||||||||||| Sbjct 580 ATGAAG-TTCTTGCAAGATCTTGTACCGGGTTGCGACAAGGTGACTGGGAAGGCAGTTAT 638 Query 1652 GCTTGACGAAATCATAAACTACGTACAATCACTACAACGCCAAGTT-GAGTTTTTATCGA 1710 ||| ||||||||||| ||||| || |||||||| ||| |||| | | ||||||||||||| Sbjct 639 GCTCGACGAAATCATTAACTATGTGCAATCACTTCAATGCCA-GATCGAGTTTTTATCGA 697 Query 1711 TGAAACTTGCAACTGTGAACCCACAAATGGACTTTAACCTTGAAGGTCTTCTTGCAAAAG 1770 |||||||| | ||||||| || | || |||||||| ||| | || |||||||||| Sbjct 698 TGAAACTTTCGGCTGTGAATCCTGTGCTCGATTTTAACCTCGAAAGCCTCCTTGCAAAAG 757 Query 1771 ATGCACTTCAA 1781 |||| |||||| Sbjct 758 ATGCTCTTCAA 768 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86617217130 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5